View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_low_37 (Length: 325)

Name: NF12877_low_37
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_low_37
NF12877_low_37
[»] chr7 (4 HSPs)
chr7 (82-311)||(11744779-11745008)
chr7 (18-308)||(11738206-11738499)
chr7 (21-53)||(20549820-20549852)
chr7 (23-55)||(22602710-22602742)
[»] scaffold0050 (1 HSPs)
scaffold0050 (21-55)||(70305-70339)
[»] chr8 (4 HSPs)
chr8 (21-55)||(4786336-4786370)
chr8 (23-55)||(8847283-8847315)
chr8 (23-55)||(11927086-11927118)
chr8 (23-55)||(26902175-26902207)
[»] chr6 (4 HSPs)
chr6 (21-55)||(7265591-7265625)
chr6 (21-54)||(21924933-21924966)
chr6 (23-55)||(7027269-7027301)
chr6 (23-55)||(9025494-9025526)
[»] chr5 (3 HSPs)
chr5 (21-55)||(28588672-28588706)
chr5 (21-53)||(30502386-30502418)
chr5 (21-53)||(30542729-30542761)
[»] chr4 (1 HSPs)
chr4 (21-55)||(54580021-54580055)
[»] chr3 (3 HSPs)
chr3 (21-55)||(7928477-7928511)
chr3 (21-55)||(40993333-40993367)
chr3 (21-54)||(8383285-8383318)
[»] chr2 (8 HSPs)
chr2 (21-55)||(5367219-5367253)
chr2 (21-55)||(20242725-20242759)
chr2 (21-54)||(34691803-34691836)
chr2 (21-54)||(34714215-34714248)
chr2 (23-56)||(44860346-44860379)
chr2 (23-55)||(12668423-12668455)
chr2 (23-55)||(18622633-18622665)
chr2 (23-55)||(36756344-36756376)
[»] chr1 (8 HSPs)
chr1 (21-55)||(30749867-30749901)
chr1 (21-55)||(30771318-30771352)
chr1 (21-54)||(52903277-52903310)
chr1 (23-55)||(1486709-1486741)
chr1 (23-55)||(5944310-5944342)
chr1 (21-57)||(24334703-24334739)
chr1 (23-55)||(34371740-34371772)
chr1 (23-55)||(44482257-44482289)
[»] scaffold0171 (1 HSPs)
scaffold0171 (23-55)||(23447-23479)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 82 - 311
Target Start/End: Original strand, 11744779 - 11745008
Alignment:
Q  82 aattatgaattgttgaattgaattgtaggatttgtggacccatctggaatatgttgtgggtatcatgaagatggataccatgtttattgtggaaataaag 181  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11744779 aattatgaattgttgaattgaattgtaggatttgttaacccttctggaatatgttgtgggtatcatgaagatggataccatgtttattgtggaaataaag 11744878  T
Q  182 caacgattaatggtaaagaaatagttgctagttcttgtgaagatccttcaaagtacattagttgggatggagtgcactacactgaagcagcaaatcaatg 281  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11744879 caatgattaatggtaaagaaatagttgctagttcttgtgaagatccttcaaagtacattagttgggatggagtgcactacactgaagcagcaaatcaatg 11744978  T
Q  282 gattgcaaatagaatacttgatggttcctt 311  Q
    ||||||||||||||||||| ||||||||||    
T  11744979 gattgcaaatagaatacttaatggttcctt 11745008  T

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Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 11738206 - 11738499
Alignment:
Q  18 atttccgacaccgacacgtataattacactgaattatgcacacnnnnnnnn---ttattaaccccttaattatgaattgttgaattgaattgtaggattt 114  Q
    |||||||||| ||||||||||||||||||||||||||||| |            ||||||||||||||| ||||||||||||||||||||||||||||||    
T  11738206 atttccgacagcgacacgtataattacactgaattatgcaaaaaaaaaaatatattattaaccccttaactatgaattgttgaattgaattgtaggattt 11738305  T
Q  115 gtggacccatctggaatatgttgtgggtatcatgaagatggataccatgtttattgtggaaataaagcaacgattaatggtaaagaaatagttgctagtt 214  Q
    || || || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||    
T  11738306 gttgatccttctggaatatgttgtgggtatcatgaaaatggataccatgtttattgtgggaataaagcaacgattaatggtaaagaaattgttacaagtt 11738405  T
Q  215 cttgtgaagatccttcaaagtacattagttgggatggagtgcactacactgaagcagcaaatcaatggattgcaaatagaatacttgatggttc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11738406 cttgtgaagatccttcaaagtacattagttgggatggagtgcactacactgaagcagcaaatcaatggattgcaaatagaatacttgatggttc 11738499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 20549852 - 20549820
Alignment:
Q  21 tccgacaccgacacgtataattacactgaatta 53  Q
    |||||||||||||| ||||||||||||||||||    
T  20549852 tccgacaccgacacatataattacactgaatta 20549820  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 22602710 - 22602742
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  22602710 cgacaccgacacatataattacactgaattatg 22602742  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 70339 - 70305
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  70339 tccgacaccgacacttataattacactgaattatg 70305  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 4786336 - 4786370
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  4786336 tccgacaccgacacatataattacactgaattatg 4786370  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 8847315 - 8847283
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  8847315 cgacaccgacacatataattacactgaattatg 8847283  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 11927086 - 11927118
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  11927086 cgacaccgacacatataattacactgaattatg 11927118  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 26902175 - 26902207
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  26902175 cgacaccgacacatataattacactgaattatg 26902207  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 7265591 - 7265625
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  7265591 tccgacaccgacacatataattacactgaattatg 7265625  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 21924933 - 21924966
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  21924933 tccgacaccgacacatataattacactgaattat 21924966  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 7027301 - 7027269
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  7027301 cgacaccgacacatataattacactgaattatg 7027269  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 9025494 - 9025526
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  9025494 cgacaccgacacatataattacactgaattatg 9025526  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 28588672 - 28588706
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  28588672 tccgacaccgacacctataattacactgaattatg 28588706  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 30502386 - 30502418
Alignment:
Q  21 tccgacaccgacacgtataattacactgaatta 53  Q
    |||||||||||||| ||||||||||||||||||    
T  30502386 tccgacaccgacacatataattacactgaatta 30502418  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 30542729 - 30542761
Alignment:
Q  21 tccgacaccgacacgtataattacactgaatta 53  Q
    |||||||||||||| ||||||||||||||||||    
T  30542729 tccgacaccgacacatataattacactgaatta 30542761  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 54580021 - 54580055
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  54580021 tccgacaccgacacttataattacactgaattatg 54580055  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 7928511 - 7928477
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  7928511 tccgacaccgacacatataattacactgaattatg 7928477  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 40993333 - 40993367
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  40993333 tccgacaccgacacatataattacactgaattatg 40993367  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 8383318 - 8383285
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  8383318 tccgacaccgacacttataattacactgaattat 8383285  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 5367253 - 5367219
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  5367253 tccgacaccgacacatataattacactgaattatg 5367219  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 20242725 - 20242759
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  20242725 tccgacaccgacacatataattacactgaattatg 20242759  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 34691803 - 34691836
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  34691803 tccgacaccgacacatataattacactgaattat 34691836  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 34714215 - 34714248
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  34714215 tccgacaccgacacatataattacactgaattat 34714248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 44860379 - 44860346
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatgc 56  Q
    |||||||||||| |||||||||||||||||||||    
T  44860379 cgacaccgacacatataattacactgaattatgc 44860346  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 12668423 - 12668455
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  12668423 cgacaccgacacttataattacactgaattatg 12668455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 18622665 - 18622633
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    ||||||| |||||||||||||||||||||||||    
T  18622665 cgacaccaacacgtataattacactgaattatg 18622633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 36756344 - 36756376
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  36756344 cgacaccgacacttataattacactgaattatg 36756376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 30749901 - 30749867
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  30749901 tccgacaccgacacatataattacactgaattatg 30749867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 30771352 - 30771318
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||||| ||||||||||||||||||||    
T  30771352 tccgacaccgacacatataattacactgaattatg 30771318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 52903310 - 52903277
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattat 54  Q
    |||||||||||||| |||||||||||||||||||    
T  52903310 tccgacaccgacacatataattacactgaattat 52903277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 1486709 - 1486741
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  1486709 cgacaccgacacttataattacactgaattatg 1486741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 5944342 - 5944310
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  5944342 cgacaccgacacttataattacactgaattatg 5944310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 24334703 - 24334739
Alignment:
Q  21 tccgacaccgacacgtataattacactgaattatgca 57  Q
    |||||||||||||| | ||||||||||||||||||||    
T  24334703 tccgacaccgacacttgtaattacactgaattatgca 24334739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 34371772 - 34371740
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  34371772 cgacaccgacacatataattacactgaattatg 34371740  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 44482289 - 44482257
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  44482289 cgacaccgacacatataattacactgaattatg 44482257  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 23479 - 23447
Alignment:
Q  23 cgacaccgacacgtataattacactgaattatg 55  Q
    |||||||||||| ||||||||||||||||||||    
T  23479 cgacaccgacacttataattacactgaattatg 23447  T

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