View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_low_4 (Length: 652)

Name: NF12877_low_4
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_low_4
NF12877_low_4
[»] chr8 (19 HSPs)
chr8 (212-629)||(9800519-9800935)
chr8 (18-138)||(9800323-9800445)
chr8 (11-120)||(9800047-9800156)
chr8 (11-120)||(17915480-17915588)
chr8 (17-120)||(10047487-10047589)
chr8 (21-120)||(26243378-26243477)
chr8 (16-117)||(10047856-10047957)
chr8 (11-88)||(12489268-12489345)
chr8 (19-120)||(13315210-13315311)
chr8 (11-120)||(26997842-26997951)
chr8 (17-120)||(6297470-6297573)
chr8 (17-116)||(16662180-16662279)
chr8 (17-120)||(17914205-17914308)
chr8 (20-120)||(7344838-7344938)
chr8 (40-120)||(16662473-16662553)
chr8 (17-119)||(6298014-6298116)
chr8 (11-117)||(26720332-26720438)
chr8 (79-124)||(39234996-39235041)
chr8 (28-120)||(12489517-12489608)
[»] chr4 (17 HSPs)
chr4 (14-117)||(52398691-52398794)
chr4 (17-120)||(7118143-7118246)
chr4 (11-117)||(26168004-26168109)
chr4 (14-120)||(29691533-29691639)
chr4 (17-117)||(41510079-41510179)
chr4 (17-120)||(3296551-3296654)
chr4 (11-120)||(51906792-51906901)
chr4 (17-117)||(3296923-3297023)
chr4 (17-120)||(29691891-29691994)
chr4 (17-120)||(30608612-30608715)
chr4 (16-103)||(34129019-34129106)
chr4 (17-120)||(34129279-34129382)
chr4 (17-118)||(48553906-48554007)
chr4 (11-103)||(30608270-30608362)
chr4 (25-117)||(38759715-38759807)
chr4 (11-117)||(1791521-1791627)
chr4 (55-125)||(26984147-26984217)
[»] chr2 (16 HSPs)
chr2 (13-120)||(21182315-21182422)
chr2 (17-117)||(32114450-32114550)
chr2 (17-120)||(2191225-2191328)
chr2 (16-118)||(39729584-39729686)
chr2 (12-117)||(3691094-3691199)
chr2 (17-120)||(3691368-3691471)
chr2 (11-113)||(10706624-10706724)
chr2 (17-120)||(32114174-32114276)
chr2 (16-117)||(2517424-2517525)
chr2 (12-120)||(21217295-21217403)
chr2 (12-120)||(21264999-21265107)
chr2 (17-109)||(24093535-24093627)
chr2 (17-120)||(24093164-24093267)
chr2 (19-120)||(32860822-32860923)
chr2 (17-117)||(21216934-21217034)
chr2 (17-117)||(21265368-21265468)
[»] chr6 (10 HSPs)
chr6 (11-120)||(14712979-14713088)
chr6 (11-115)||(21113042-21113146)
chr6 (11-120)||(7645955-7646064)
chr6 (55-120)||(8710357-8710422)
chr6 (55-120)||(5974019-5974084)
chr6 (11-120)||(17157554-17157663)
chr6 (61-120)||(211449-211508)
chr6 (19-120)||(4510196-4510298)
chr6 (55-120)||(211738-211803)
chr6 (59-120)||(17157854-17157915)
[»] chr5 (15 HSPs)
chr5 (17-120)||(16284282-16284385)
chr5 (16-116)||(8648043-8648143)
chr5 (20-120)||(18999622-18999722)
chr5 (17-120)||(3406839-3406941)
chr5 (22-120)||(1650013-1650110)
chr5 (11-120)||(31588319-31588429)
chr5 (16-120)||(87239-87343)
chr5 (17-120)||(18999374-18999477)
chr5 (11-120)||(13987290-13987400)
chr5 (52-120)||(22231174-22231242)
chr5 (17-120)||(8750339-8750442)
chr5 (17-120)||(31176515-31176618)
chr5 (20-118)||(3406469-3406567)
chr5 (11-117)||(3935667-3935773)
chr5 (17-111)||(18339090-18339184)
[»] chr7 (15 HSPs)
chr7 (14-120)||(22948854-22948960)
chr7 (17-120)||(20544290-20544392)
chr7 (16-116)||(11974676-11974776)
chr7 (13-73)||(44803381-44803441)
chr7 (17-120)||(44803611-44803714)
chr7 (11-120)||(20543919-20544028)
chr7 (17-117)||(23548986-23549086)
chr7 (16-120)||(32092236-32092340)
chr7 (55-120)||(30939581-30939646)
chr7 (20-120)||(28854685-28854785)
chr7 (17-120)||(17075227-17075330)
chr7 (55-120)||(16755650-16755714)
chr7 (19-120)||(18152764-18152865)
chr7 (17-117)||(17075596-17075696)
chr7 (17-125)||(42750097-42750205)
[»] chr1 (18 HSPs)
chr1 (11-120)||(9880763-9880872)
chr1 (11-116)||(31436356-31436461)
chr1 (11-120)||(50359412-50359521)
chr1 (16-88)||(19895778-19895850)
chr1 (17-120)||(18180257-18180360)
chr1 (11-120)||(5683534-5683643)
chr1 (10-120)||(48154982-48155091)
chr1 (17-120)||(5172753-5172856)
chr1 (17-120)||(9880492-9880595)
chr1 (11-120)||(6751326-6751436)
chr1 (14-120)||(18179887-18179993)
chr1 (11-117)||(3591310-3591416)
chr1 (78-120)||(4288475-4288517)
chr1 (55-117)||(50359136-50359198)
chr1 (55-120)||(1500998-1501063)
chr1 (55-120)||(37927528-37927593)
chr1 (17-120)||(48155258-48155361)
chr1 (16-120)||(19895408-19895512)
[»] chr3 (14 HSPs)
chr3 (17-117)||(43933451-43933551)
chr3 (17-120)||(13637759-13637862)
chr3 (11-120)||(22814304-22814413)
chr3 (20-119)||(44504368-44504467)
chr3 (13-120)||(51471343-51471450)
chr3 (18-120)||(43933708-43933809)
chr3 (17-122)||(44504098-44504203)
chr3 (16-120)||(25770694-25770798)
chr3 (13-120)||(9218489-9218595)
chr3 (11-120)||(50732233-50732342)
chr3 (11-120)||(50780513-50780622)
chr3 (16-72)||(13637531-13637587)
chr3 (17-117)||(37172092-37172192)
chr3 (56-120)||(45728335-45728399)
[»] scaffold0063 (2 HSPs)
scaffold0063 (11-120)||(34800-34909)
scaffold0063 (18-120)||(35172-35274)
[»] scaffold0009 (1 HSPs)
scaffold0009 (11-120)||(108095-108204)


Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 212 - 629
Target Start/End: Original strand, 9800519 - 9800935
Alignment:
Q  212 gacaacggtatttcatctaataagtacctactcgatcctctagaaagacatttgtagtagtattttgttttggacaattttccttcttttatgaacatag 311  Q
    ||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  9800519 gacaaaggtatttcatcta-tatgtacctattcgatcctctagaaagacatttgtagtagcattttgttttggacaattttcctttttttatgaacatag 9800617  T
Q  312 caacttgtcatcataggaaaagaatgagtgtgagagttgcaaatatttctttcttccgtaccatttattattacgtggtaaactcaatgctttgttaatg 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9800618 caacttgtcatcataggaaaagaatgagtgtgagagttgcaaatatatctttcttccgtaccatttattattacgtggtaaactcaatgctttgttaatg 9800717  T
Q  412 tttttggtaagagacaagcaaccgacttcatctttaacatgcgcacacaaaacatcaaaggttcataactatgagtcacatgtgagttattgttggttcc 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9800718 tttttggtaagagacaagcaaccgacttcatctttaacatgcgcacacaaaacatcaaaggttcataactatgagtcacatgtgagttattgttggttcc 9800817  T
Q  512 actattcagcacgagcaccataaataatgtaatcaaatcatttcttaaacttgaaggttagcttgtccttatcaatctaaaattaaaatatccatccact 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9800818 actattcagcacgagcaccataaataatgtaatcaaatcatttcttaaacttgaaggttagtttgtccttatcaatctaaaattaaaatatccatccact 9800917  T
Q  612 tgcaaataataatagccc 629  Q
    ||||||||||||||||||    
T  9800918 tgcaaataataatagccc 9800935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 9800323 - 9800445
Alignment:
Q  18 actaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa- 116  Q
    ||||||||||||||| |||||||||| |||| | || ||||| ||||||| |||| ||  ||||||||||| || |||||||||||  |||||| ||||     
T  9800323 actaattttgataacgaagataaaatgtaaggattttaaaaacatttaatgaaatatatggactattcttcaaaggggcgcaaaatgcaaggaccaaaaa 9800422  T
Q  117 -acatttaactagatggagttaa 138  Q
     | ||||||||||| ||||||||    
T  9800423 tatatttaactagagggagttaa 9800445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 9800156 - 9800047
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    |||| |||||||||||||||||  |||| |||| | || | || ||||| |||||||||||| ||| || |||||||| ||  |||||||||| ||||||    
T  9800156 agcaaagactaattttgataacggagatgaaatgtgaggattttaaaaacatttaataaaatgtaaggattattcttcaaagaggcgcaaaatctaagga 9800057  T
Q  111 ctaaaaacat 120  Q
    ||||||||||    
T  9800056 ctaaaaacat 9800047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 17915480 - 17915588
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    |||| |||||||||||||||||| ||||||||| | || | || ||||| |||||||||||| ||| || |||||||| || | || |||||| ||||||    
T  17915480 agcaaagactaattttgataacagagataaaatgtgaggatttaaaaaacatttaataaaatgtaagga-tattcttcaaaggagcacaaaatgtaagga 17915578  T
Q  111 ctaaaaacat 120  Q
    ||||||||||    
T  17915579 ctaaaaacat 17915588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 10047589 - 10047487
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||| | |||| || ||||| ||||||| || | ||  ||||||||||| |||||||||||||| |||||| |||||    
T  10047589 gactaattttgataacggagataaaatgtgagaattttaaaaacatttaatgaa-tgtagggactattcttcaaaagggcgcaaaatgtaaggattaaaa 10047491  T
Q  117 acat 120  Q
    ||||    
T  10047490 acat 10047487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 26243378 - 26243477
Alignment:
Q  21 aattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    |||||||||||   ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| || | ||||||||||||||||||||||||||    
T  26243378 aattttgataatggagataaaatgtgaggattttaaaaacatttaatgaaatatagagactattcttcaaaggagcgcaaaatataaggactaaaaacat 26243477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 10047856 - 10047957
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 115  Q
    |||||||||||||||||  ||||||||||| | || || ||||||||||||| | || ||||||||||||||| || | | | ||||| |||||| ||||    
T  10047856 agactaattttgataacggagataaaatatgaaaattttaaaaatatttaatgatatataaagactattcttcaaaggagtggaaaatgtaaggattaaa 10047955  T
Q  116 aa 117  Q
    ||    
T  10047956 aa 10047957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 12489345 - 12489268
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttc 88  Q
    |||||||||||||||||||||||||||||||||   || | || ||||||||||||| |||| ||  |||||||||||    
T  12489345 agcagagactaattttgataacaaagataaaatgcgaggattttaaaaatatttaatgaaatgtagggactattcttc 12489268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 13315311 - 13315210
Alignment:
Q  19 ctaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaac 118  Q
    ||||||||||||||| ||||||||| | |  | || ||||| ||||||| |||| ||  ||||||||||  || ||||||||||| ||||||||||||||    
T  13315311 ctaattttgataacagagataaaatgtgatgattttaaaaacatttaatgaaatgtagggactattctttaaatgggcgcaaaatgtaaggactaaaaac 13315212  T
Q  119 at 120  Q
    ||    
T  13315211 at 13315210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 26997842 - 26997951
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| ||||||||||||||||  ||||||||| | || | || ||||||| ||||| |||| ||  ||||||||||| || || |||||||| |||| |    
T  26997842 agcagggactaattttgataacggagataaaatgtgaggattttaaaaataattaatgaaatgtatggactattcttcaaatggacgcaaaatgtaagaa 26997941  T
Q  111 ctaaaaacat 120  Q
    ||||||||||    
T  26997942 ctaaaaacat 26997951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 6297573 - 6297470
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||| ||| ||||| | || | || ||||| ||||||| |||| ||   |||||||||| || ||||||||||| |||||||||||     
T  6297573 gactaattttgataacagagagaaaatgtgaggattttaaaaacatttaatgaaatgtaggaactattcttcaaaggggcgcaaaatgtaaggactaaag 6297474  T
Q  117 acat 120  Q
    ||||    
T  6297473 acat 6297470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 16662279 - 16662180
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||||||||| |||||| ||||||||| | |||| || ||||| ||||||| |||| ||  ||||||||||| || | ||||||||| |||| |||||||    
T  16662279 gactaattttaataacagagataaaatgtgagaattttaaaaacatttaatgaaatgtagggactattcttcaaaggagcgcaaaatgtaagaactaaaa 16662180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 17914308 - 17914205
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||| ||||||||| | || | || ||||| |||||||||||| ||  ||||||||||| ||  | |||||||| ||| |||| |||    
T  17914308 gactaattttgataacagagataaaatgtgaggattttaaaaacatttaataaaatgtagggactattcttcaaagagacgcaaaatgtaaagacttaaa 17914209  T
Q  117 acat 120  Q
    ||||    
T  17914208 acat 17914205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 7344838 - 7344938
Alignment:
Q  20 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaaca 119  Q
    |||||||||||||  | ||||||||| || | || ||||| || ||||||||| ||  || |||||||| || |||| |||||| |||||||||||||||    
T  7344838 taattttgataacggacataaaatatgaggattttaaaaacatataataaaatgtatggattattcttcaaaggggcacaaaatgtaaggactaaaaaca 7344937  T
Q  120 t 120  Q
    |    
T  7344938 t 7344938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 16662473 - 16662553
Alignment:
Q  40 aaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    |||||| |||| || ||||| ||||||| |||| ||   |||||||||| |||| ||||||||| ||||||||||||||||    
T  16662473 aaatatgagaattttaaaaacatttaatgaaatgtaggaactattcttcaaaagagcgcaaaatgtaaggactaaaaacat 16662553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 6298014 - 6298116
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  | ||||||| | || | || ||||| ||||||| |||| ||| ||||||||||| || ||  ||||||| |||| |||||||    
T  6298014 gactaattttgataacggaaataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaagggaagcaaaatgtaagcactaaaa 6298113  T
Q  117 aca 119  Q
    |||    
T  6298114 aca 6298116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 26720438 - 26720332
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    |||||||| ||||| || ||||| ||| ||||| || | | || ||||||||||||| |||| ||  ||||||||||| || | ||||||||| || |||    
T  26720438 agcagagattaattgtgttaacagagaaaaaatgtagggattttaaaaatatttaatgaaatgtagggactattcttcaaaggagcgcaaaatgtaggga 26720339  T
Q  111 ctaaaaa 117  Q
    |||||||    
T  26720338 ctaaaaa 26720332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 39234996 - 39235041
Alignment:
Q  79 actattcttcgaaagggcgcaaaatataaggactaaaaacatttaa 124  Q
    |||||||||| || | ||| ||||||||||||||||||||||||||    
T  39234996 actattcttcaaaggagcgtaaaatataaggactaaaaacatttaa 39235041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 12489517 - 12489608
Alignment:
Q  28 ataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    |||||| ||||||||| |||| | || ||||| ||| ||| |||| ||| |||||||||||  || | |||||||| ||||||||||||||||    
T  12489517 ataacagagataaaatgtaaggattttaaaaacatt-aatgaaatgtaaggactattcttcataacgacgcaaaatgtaaggactaaaaacat 12489608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 52398794 - 52398691
Alignment:
Q  14 agagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggacta 113  Q
    ||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||  | |||||||||||| ||  |||||||||| |||||| ||    
T  52398794 agagactaattttgataacgaaaataaaatataagaattttaaaaatatttaataaaatgcagagactattcttcaaagtggcgcaaaatgtaaggaata 52398695  T
Q  114 aaaa 117  Q
    ||||    
T  52398694 aaaa 52398691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 7118143 - 7118246
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||||||||||||||   ||||||||| | |||| || ||||| ||||||| |||| ||  ||||||||||| || ||||||||||| ||||||||||||    
T  7118143 gactaattttgataatggagataaaatttgagaattttaaaaacatttaatgaaatgtatggactattcttcaaaggggcgcaaaatgtaaggactaaaa 7118242  T
Q  117 acat 120  Q
    ||||    
T  7118243 acat 7118246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 26168109 - 26168004
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||||||||||||||||||||  ||||||||| | || | || ||||||||||||| |||| || | |||||||||  |||||||||||||| ||| ||    
T  26168109 agcagagactaattttgataacggagataaaatgtgaggattttaaaaatatttaat-aaatgtagaaactattctttaaaagggcgcaaaatgtaatga 26168011  T
Q  111 ctaaaaa 117  Q
    |||||||    
T  26168010 ctaaaaa 26168004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 29691639 - 29691533
Alignment:
Q  14 agagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggacta 113  Q
    |||||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| || ||  |||||||||||||||||    
T  29691639 agagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaatggatgcaaaatataaggacta 29691540  T
Q  114 aaaacat 120  Q
    |||||||    
T  29691539 aaaacat 29691533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 41510179 - 41510079
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||||||||||||||   ||||||||||| || | || | |||||||||||||||| ||  ||||||||||| || ||||||||||| |||||| |||||    
T  41510179 gactaattttgataagggagataaaatatgaggattttagaaatatttaataaaatgtagggactattcttcaaaggggcgcaaaatgtaaggattaaaa 41510080  T
Q  117 a 117  Q
    |    
T  41510079 a 41510079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 3296654 - 3296551
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||  || |||||||| || ||||||||||| ||||||||||||    
T  3296654 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggaatattcttcaaaggggcgcaaaatgtaaggactaaaa 3296555  T
Q  117 acat 120  Q
    ||||    
T  3296554 acat 3296551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 51906792 - 51906901
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    |||||| |||||||||||||||  ||||||||| | || | || ||||| ||||||| | || ||  ||||||||||| || | ||||||||| ||||||    
T  51906792 agcagaaactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgagatgtagggactattcttcaaaggagcgcaaaatgtaagga 51906891  T
Q  111 ctaaaaacat 120  Q
    ||||||||||    
T  51906892 ctaaaaacat 51906901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 3296923 - 3297023
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||| |||| | || ||||| ||||||| |||  ||  ||||||||||| || || |||||||| ||||||||||||    
T  3296923 gactaattttgataacggagataaaatgtaaggattttaaaaacatttaatgaaacgtagggactattcttcaaagggtcgcaaaatgtaaggactaaaa 3297022  T
Q  117 a 117  Q
    |    
T  3297023 a 3297023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 29691891 - 29691994
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||| ||||||||| | || | || ||||||||||||| |||| |||| |||||| ||| || | ||| |||||  || ||||||||    
T  29691891 gactaattttgataacagagataaaatgtgaggattttaaaaatatttaatgaaatataaaaactattattcaaaggagcgtaaaatgcaaagactaaaa 29691990  T
Q  117 acat 120  Q
    ||||    
T  29691991 acat 29691994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 30608612 - 30608715
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| ||  ||| |||||| ||||| ||||||    
T  30608612 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatatagagactattcttcaaagaggcacaaaatgtaaggtctaaaa 30608711  T
Q  117 acat 120  Q
    ||||    
T  30608712 acat 30608715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 34129106 - 34129019
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaat 103  Q
    ||||||| ||||||||| |||||||||||| |||| || |||||  ||||||||||| ||  ||||||||||| || || ||||||||    
T  34129106 agactaactttgataacgaagataaaatatgagaattttaaaaacgtttaataaaatatagggactattcttcaaagggacgcaaaat 34129019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 34129279 - 34129382
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||| ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| ||  || ||||||| ||||| || |||    
T  34129279 gactaattttgataacagagataaaatgtgaggattttaaaaatatttaatgaaatgtagggactattcttcaaattggtgcaaaatgtaagggctgaaa 34129378  T
Q  117 acat 120  Q
    ||||    
T  34129379 acat 34129382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 48554007 - 48553906
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||| | || | || |||||  |||||| |||| ||  ||||||||||| || || |||||||| ||||||||||||    
T  48554007 gactaattttgataacggagataaaatgtgaggattttaaaaaggtttaatgaaatgtatggactattcttcaaagggacgcaaaatgtaaggactaaaa 48553908  T
Q  117 ac 118  Q
    ||    
T  48553907 ac 48553906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 30608362 - 30608270
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaat 103  Q
    ||||||||||||||||||||||  ||||||||| | || | || |||||||| |||| |||| ||  ||||||||||| ||| | ||||||||    
T  30608362 agcagagactaattttgataacggagataaaatgtgaggattttaaaaatatataatgaaatgtagggactattcttcaaaatgacgcaaaat 30608270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 38759807 - 38759715
Alignment:
Q  25 ttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 117  Q
    ||||||||  ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| ||  |||||||||| |||||||||||||    
T  38759807 ttgataacggagataaaatttgaggattttaaaaacatttaatgaaatgtatagactattcttcaaagaggcgcaaaatttaaggactaaaaa 38759715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 1791521 - 1791627
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    |||||||||||||||| |||||  ||||||||| |||  | || ||||| |||||||||||| | |  |||||| ||| || ||| |||||||| |||||    
T  1791521 agcagagactaattttaataacggagataaaatgtaaagattttaaaaacatttaataaaatgtgagaactatttttcaaaggggagcaaaatacaagga 1791620  T
Q  111 ctaaaaa 117  Q
     ||||||    
T  1791621 ttaaaaa 1791627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 26984217 - 26984147
Alignment:
Q  55 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacatttaac 125  Q
    ||||| |||||||||| | ||  ||||||||||| ||  ||||||||||||||  ||||||||||||||||    
T  26984217 aaaaacatttaataaagtctagggactattcttcaaagaggcgcaaaatataaaaactaaaaacatttaac 26984147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 21182422 - 21182315
Alignment:
Q  13 cagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggact 112  Q
    ||||||||||||||||||||| ||||||||| | | || || ||||| ||||||| |||| ||| ||||||||||| || ||||||||||| ||||||||    
T  21182422 cagagactaattttgataacagagataaaatgtgaaaattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggcgcaaaatgtaaggact 21182323  T
Q  113 aaaaacat 120  Q
    ||||||||    
T  21182322 aaaaacat 21182315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 32114450 - 32114550
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||| ||||||| | | |||| || ||||||||||||| |||| ||| |||||||||| |||  |||||||||| ||||||||||||    
T  32114450 gactaattttgataacagagataaagtgtgagaattttaaaaatatttaatgaaatgtaaggactattctttgaagaggcgcaaaatgtaaggactaaaa 32114549  T
Q  117 a 117  Q
    |    
T  32114550 a 32114550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 2191328 - 2191225
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||| ||||||||||| || ||||||||||| ||||||||||||    
T  2191328 gactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggcgcaaaatgtaaggactaaaa 2191229  T
Q  117 acat 120  Q
    ||||    
T  2191228 acat 2191225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 39729584 - 39729686
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 115  Q
    |||||||||| ||||||  ||||||||| | || | || ||||||||||||| |||| ||||||||||||||| ||  | ||||||||||||||||||||    
T  39729584 agactaatttcgataacggagataaaatgtgaggattttaaaaatatttaatgaaatataaagactattcttcaaactgacgcaaaatataaggactaaa 39729683  T
Q  116 aac 118  Q
    |||    
T  39729684 aac 39729686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 3691199 - 3691094
Alignment:
Q  12 gcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggac 111  Q
    |||| ||||||||||||||||   |||||||| | || | || ||||| ||||||| |||| ||   |||||||||| ||||||||||||||||||||||    
T  3691199 gcagggactaattttgataacggtgataaaatgtgaggattttaaaaacatttaatgaaatgtaggaactattcttcaaaagggcgcaaaatataaggac 3691100  T
Q  112 taaaaa 117  Q
    ||||||    
T  3691099 taaaaa 3691094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 3691368 - 3691471
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||| | |  | || ||||| ||||||| |||| ||  ||||||||||| || |||||||||||| |||||||||||    
T  3691368 gactaattttgataacggagataaaatgtgaagattttaaaaacatttaatgaaatgtagggactattcttcaaaggggcgcaaaatacaaggactaaaa 3691467  T
Q  117 acat 120  Q
    ||||    
T  3691468 acat 3691471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 10706624 - 10706724
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| ||||| ||||||||||  ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| || ||||||||||| ||||||    
T  10706624 agcagggactagttttgataacggagataaaatgtgaggattttaaaaatatttaatgaaatata--gactattcttcaaaggggcgcaaaatgtaagga 10706721  T
Q  111 cta 113  Q
    |||    
T  10706722 cta 10706724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 32114276 - 32114174
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||||||||||||| || ||||||||| | || | || ||||| |||||||| | | ||  ||||||||||| |||||||| ||||| ||||||||||||    
T  32114276 gactaattttgatatcagagataaaatgtgaggattttaaaaacatttaatagattgtagggactattcttc-aaagggcgtaaaatgtaaggactaaaa 32114178  T
Q  117 acat 120  Q
    ||||    
T  32114177 acat 32114174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 2517525 - 2517424
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 115  Q
    |||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  | |||||||| |||||||||||    
T  2517525 agactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagagacgcaaaatgtaaggactaaa 2517426  T
Q  116 aa 117  Q
    ||    
T  2517425 aa 2517424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 21217295 - 21217403
Alignment:
Q  12 gcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggac 111  Q
    |||| ||||||||||| ||||   |||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| |||||||    
T  21217295 gcagggactaattttgttaacggggataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagcggcgcaaaatgtaaggac 21217394  T
Q  112 taaaaacat 120  Q
    |||||||||    
T  21217395 taaaaacat 21217403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 21265107 - 21264999
Alignment:
Q  12 gcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggac 111  Q
    |||| ||||||||||| ||||   |||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| |||||||    
T  21265107 gcagggactaattttgttaacggggataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagcggcgcaaaatgtaaggac 21265008  T
Q  112 taaaaacat 120  Q
    |||||||||    
T  21265007 taaaaacat 21264999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 24093535 - 24093627
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagg 109  Q
    ||||||||||||||||  ||||||||| |||| | || ||||| |||||||||||| ||   |||||||||| || ||| ||||||| |||||    
T  24093535 gactaattttgataacggagataaaatgtaaggattttaaaaacatttaataaaatataggcactattcttcaaatgggtgcaaaatgtaagg 24093627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 24093267 - 24093164
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||| ||||||||||| |||| || || | || | || ||||| ||||||| |||| ||  ||||||||||| || ||||||||| | ||||||||||||    
T  24093267 gactgattttgataacgaagagaagatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaaggggcgcaaagtgtaaggactaaaa 24093168  T
Q  117 acat 120  Q
    ||||    
T  24093167 acat 24093164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 32860923 - 32860822
Alignment:
Q  19 ctaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaac 118  Q
    ||||||||||| ||  ||||||||| | || | || ||||| ||||||| |||| ||| ||||||| ||| || || |||||||||||| | ||||||||    
T  32860923 ctaattttgatcacggagataaaatgttaggattttaaaaacatttaatgaaatataacgactatttttcaaagggacgcaaaatataaaggctaaaaac 32860824  T
Q  119 at 120  Q
    ||    
T  32860823 at 32860822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 21217034 - 21216934
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||    ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||    
T  21217034 gactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagaggcgcaaaatgtaaggactaaaa 21216935  T
Q  117 a 117  Q
    |    
T  21216934 a 21216934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 21265368 - 21265468
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||    ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||    
T  21265368 gactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagaggcgcaaaatgtaaggactaaaa 21265467  T
Q  117 a 117  Q
    |    
T  21265468 a 21265468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 14712979 - 14713088
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||||||||||||||||||||| ||||||||||| || | ||| |||| ||||||| |||| ||| ||||||||||| |||| ||||||||| |||| |    
T  14712979 agcagagactaattttgataacagagataaaatatgagcatttctaaaacatttaatgaaatgtaaggactattcttcaaaagagcgcaaaatgtaagaa 14713078  T
Q  111 ctaaaaacat 120  Q
     |||||||||    
T  14713079 ttaaaaacat 14713088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 21113146 - 21113042
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    |||||||||||||||||||||   ||||||||| | |||| || ||||| ||||||| |||| || |||||||||||| | |||||||||||| ||||||    
T  21113146 agcagagactaattttgataaaggagataaaatgtgagaattttaaaaacatttaatgaaatgtagagactattcttcaatagggcgcaaaatgtaagga 21113047  T
Q  111 ctaaa 115  Q
    |||||    
T  21113046 ctaaa 21113042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 7645955 - 7646064
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| ||||||||||||||||  ||||||||| | |||| ||  |||| ||||| | |||| ||| ||||||||||| || | || |||||| ||||||    
T  7645955 agcagggactaattttgataacggagataaaatgtgagaatttttaaaacatttattgaaatgtaaggactattcttcaaaggagcacaaaatgtaagga 7646054  T
Q  111 ctaaaaacat 120  Q
    ||||||||||    
T  7646055 ctaaaaacat 7646064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 8710357 - 8710422
Alignment:
Q  55 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||| ||||||| |||| ||| ||||||||||| || ||| ||||||||||||||||||||||||    
T  8710357 aaaaacatttaatgaaatgtaaggactattcttcaaaggggtgcaaaatataaggactaaaaacat 8710422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 5974084 - 5974019
Alignment:
Q  55 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||| ||||||| |||| ||  ||||||||||| || ||| ||||||||||||||||||||||||    
T  5974084 aaaaacatttaatgaaatgtagggactattcttcaaaggggtgcaaaatataaggactaaaaacat 5974019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 17157663 - 17157554
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| ||||||||||||||| | ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| |   |||| ||||| |||| |    
T  17157663 agcagtgactaattttgataatagagataaaatgtgaggattttaaaaatatttaatgaaatgtatggactattcttcaatgaggcgtaaaatgtaagaa 17157564  T
Q  111 ctaaaaacat 120  Q
    ||||||||||    
T  17157563 ctaaaaacat 17157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 211508 - 211449
Alignment:
Q  61 atttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||||| |||| ||  ||||||||||| || ||||||||||| ||||||||||||||||    
T  211508 atttaatgaaatgtacggactattcttcaaaggggcgcaaaatgtaaggactaaaaacat 211449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 4510298 - 4510196
Alignment:
Q  19 ctaattttgataacaaagataaaatata-agaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 117  Q
    ||||||||||||||  |||||||||||  || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||| ||||| |||||||||||||    
T  4510298 ctaattttgataaccgagataaaatatggaggattttaaaaacatttaatgaaatgtagggactattcttcaaataggcgtaaaatgtaaggactaaaaa 4510199  T
Q  118 cat 120  Q
    |||    
T  4510198 cat 4510196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 211738 - 211803
Alignment:
Q  55 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||||||||||| |||| ||  ||||||||||| ||  |||||||||| |||||| |||||||||    
T  211738 aaaaatatttaatgaaatgtagggactattcttcaaataggcgcaaaatgtaaggattaaaaacat 211803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 17157854 - 17157915
Alignment:
Q  59 atatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||||||    
T  17157854 atatttaatgaaatgtagggactattcttcaaagtggcgcaaaatgtaaggactaaaaacat 17157915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 16284385 - 16284282
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||||| || | || ||||| |||||||||||| ||||||||||||||| |||   |||||||| ||||||||||||    
T  16284385 gactaattttgataacggagataaaatatgaggattttaaaaacatttaataaaatataaagactattcttcaaaaaaacgcaaaatgtaaggactaaaa 16284286  T
Q  117 acat 120  Q
    ||||    
T  16284285 acat 16284282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 8648043 - 8648143
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 115  Q
    |||||||||||||||||  ||| ||||| | || | || ||||||||||||| |||| ||||||||||||||| ||||| |||||||| |||||||||||    
T  8648043 agactaattttgataacggagaaaaaatgtgaggattttaaaaatatttaatgaaatgtaaagactattcttccaaaggacgcaaaatgtaaggactaaa 8648142  T
Q  116 a 116  Q
    |    
T  8648143 a 8648143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 18999622 - 18999722
Alignment:
Q  20 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaaca 119  Q
    |||||||||||||||||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| ||| |  ||||||| |||||||||||||||    
T  18999622 taattttgataacaaagataaaatgtgaggattttaaaaatatttaatgaaatgtatggactattcttcaaaatgaagcaaaatgtaaggactaaaaaca 18999721  T
Q  120 t 120  Q
    |    
T  18999722 t 18999722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 3406839 - 3406941
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||| ||||||||| | |||| || |||||||||||||||||| |    |||||||||| ||| ||||||||||||||  |||||||    
T  3406839 gactaattttgataacagagataaaatgtgagaattttaaaaatatttaataaaatattggaactattcttcaaaaaggcgcaaaatataa-aactaaaa 3406937  T
Q  117 acat 120  Q
    ||||    
T  3406938 acat 3406941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 1650110 - 1650013
Alignment:
Q  22 attttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    |||||||||||  |||||||||||||||| || ||||| |||||||||||| || | | |||||||| ||| ||||||||||||||  |||||||||||    
T  1650110 attttgataacggagataaaatataagaattttaaaaacatttaataaaatgtagataatattcttc-aaatggcgcaaaatataaatactaaaaacat 1650013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 31588319 - 31588429
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaaggg-cgcaaaatataagg 109  Q
    ||||| ||||||||||||||||  ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| || ||| |||||||| |||||    
T  31588319 agcagggactaattttgataacggagataaaatgttaggattttaaaaatatttaatgaaatgtagggactattcttcaaaggggacgcaaaatgtaagg 31588418  T
Q  110 actaaaaacat 120  Q
    |||||||||||    
T  31588419 actaaaaacat 31588429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 87239 - 87343
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 115  Q
    |||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| || || | ||||||||||||||||||    
T  87239 agactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagggacacaaaatataaggactaaa 87338  T
Q  116 aacat 120  Q
    |||||    
T  87339 aacat 87343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 18999477 - 18999374
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  |||||||||   || | || ||||||||||||| |||| ||  ||||||||||| |||| | ||||||| ||||||||||||    
T  18999477 gactaattttgataacggagataaaatgagaggattttaaaaatatttaatgaaatgtatggactattcttcaaaagagtgcaaaatgtaaggactaaaa 18999378  T
Q  117 acat 120  Q
    ||||    
T  18999377 acat 18999374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 13987400 - 13987290
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaat-atttaataaaatttaaagactattcttcgaaagggcgcaaaatataagg 109  Q
    |||||||||||||||| |||||  ||||||||| | |||| || |||||  ||||||| |||| || ||| |||||||| ||||||||| |||| ||||     
T  13987400 agcagagactaattttaataacggagataaaatgtgagaattttaaaaaacatttaatgaaatatagagattattcttcaaaagggcgcgaaatgtaaga 13987301  T
Q  110 actaaaaacat 120  Q
    |||||||||||    
T  13987300 actaaaaacat 13987290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 22231174 - 22231242
Alignment:
Q  52 ttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    |||||||| ||||||| |||| ||  ||||||||||  || ||||||||||||||||||||||||||||    
T  22231174 ttcaaaaacatttaatgaaatatagggactattctttaaaggggcgcaaaatataaggactaaaaacat 22231242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 8750339 - 8750442
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||||| || | || ||| | |||||||||||| ||  ||||||||||| ||    |||||||| ||||||||||||    
T  8750339 gactaattttgataacggagataaaatatgaggattttaaacacatttaataaaatgtagggactattcttcaaagaaacgcaaaatgtaaggactaaaa 8750438  T
Q  117 acat 120  Q
    ||||    
T  8750439 acat 8750442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 31176618 - 31176515
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||   |||||||||| |  | || ||||| ||||||| |||| ||  |||| |||||| || || |||||||||||||||||||||    
T  31176618 gactaattttgataacggggataaaatatgacgattttaaaaacatttaatgaaatgtatggactgttcttcaaagggacgcaaaatataaggactaaaa 31176519  T
Q  117 acat 120  Q
    ||||    
T  31176518 acat 31176515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 3406567 - 3406469
Alignment:
Q  20 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaac 118  Q
    |||||||||||||| |||||||||||||| | || ||||| ||||||| |||| ||   ||||||||||| |  | ||||| || |||||| |||||||    
T  3406567 taattttgataacagagataaaatataaggattttaaaaacatttaatgaaatatatgaactattcttcgtagagacgcaatatttaaggattaaaaac 3406469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 3935667 - 3935773
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    |||||||||||||||| |||||||||||||||| | || | || ||||| | ||||| |||| ||  || |||||||| || | ||| |||||  |||||    
T  3935667 agcagagactaattttaataacaaagataaaatgtgaggattttaaaaacaattaatgaaatgtagggattattcttcaaaggagcgtaaaatgaaagga 3935766  T
Q  111 ctaaaaa 117  Q
    |||||||    
T  3935767 ctaaaaa 3935773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 18339184 - 18339090
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggac 111  Q
    ||||||||||||| |   ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| || ||||||||||| |||||||    
T  18339184 gactaattttgatgatggagataaaatgtgaggattttaaaaacatttaatgaaatatagagactattcttcaaaggggcgcaaaatgtaaggac 18339090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 22948854 - 22948960
Alignment:
Q  14 agagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggacta 113  Q
    |||||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| || |||||||||||| || || |||||||| |||||||||    
T  22948854 agagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagagactattcttcaaagggtcgcaaaatgtaaggacta 22948953  T
Q  114 aaaacat 120  Q
    |||||||    
T  22948954 aaaacat 22948960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 20544290 - 20544392
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||| ||||||||||| |||||||||| | |||  || ||||| ||||||| |||| ||| ||||||||||| ||| || ||||||||||||||||||||    
T  20544290 gactgattttgataacgaagataaaatgtgagatttt-aaaaacatttaatgaaatgtaaggactattcttcaaaaaggtgcaaaatataaggactaaaa 20544388  T
Q  117 acat 120  Q
    ||||    
T  20544389 acat 20544392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 11974776 - 11974676
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 115  Q
    ||||||||||||||||| |||||||||| | || | || ||||| ||||||| |||| || |||||||| ||| || | ||||||||| |||||||||||    
T  11974776 agactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaatgtacagactatttttcaaaggagcgcaaaatgtaaggactaaa 11974677  T
Q  116 a 116  Q
    |    
T  11974676 a 11974676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 44803441 - 44803381
Alignment:
Q  13 cagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatt 73  Q
    |||||||||||||||||| || |||||||||||||| | || |||||||||||||||||||    
T  44803441 cagagactaattttgatagcagagataaaatataaggattttaaaaatatttaataaaatt 44803381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 44803611 - 44803714
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||| | |||| || ||||| ||||||| |||| || |||||||||||  ||   ||||||||| ||||||||||||    
T  44803611 gactaattttgataacggagataaaatgtgagaattttaaaaacatttaatgaaatgtagagactattctttaaagaagcgcaaaatgtaaggactaaaa 44803710  T
Q  117 acat 120  Q
    ||||    
T  44803711 acat 44803714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 20544028 - 20543919
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    |||||| |||||||||||||||  ||||||||||| || | || ||||| ||||||| |||| ||  ||||||||||| || |||| |||||| |||| |    
T  20544028 agcagaaactaattttgataacggagataaaatatgaggattttaaaaaaatttaatgaaatgtagggactattcttcaaaggggcacaaaatgtaagaa 20543929  T
Q  111 ctaaaaacat 120  Q
     |||||||||    
T  20543928 ttaaaaacat 20543919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 23548986 - 23549086
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  | ||||||| | || | |||||||| ||||||| |||| || ||| |||||||| |||||||||||||| |||| | |||||    
T  23548986 gactaattttgataacggaaataaaatttgaggatttcaaaaagatttaatgaaatatagagagtattcttcaaaagggcgcaaaatgtaagaaataaaa 23549085  T
Q  117 a 117  Q
    |    
T  23549086 a 23549086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 32092340 - 32092236
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 115  Q
    |||||||||||||||||||| | ||||| | || | || ||||| ||||||| ||||  |  ||||||||||| ||  |||||||||| |||||||||||    
T  32092340 agactaattttgataacaaacacaaaatgtgaggattttaaaaacatttaatgaaatgcagggactattcttcaaagaggcgcaaaatgtaaggactaaa 32092241  T
Q  116 aacat 120  Q
    |||||    
T  32092240 aacat 32092236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 30939581 - 30939646
Alignment:
Q  55 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||||||||||| |||| ||  ||||||||||||||| |||| ||||| || |||||||||||||    
T  30939581 aaaaatatttaatgaaatgtagggactattcttcgaaatggcgtaaaatgtagggactaaaaacat 30939646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 28854785 - 28854685
Alignment:
Q  20 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaaca 119  Q
    |||||||||||||  | ||||||| | || | || ||||| |||||||||||| ||  || |||||||  || |||||||||||||||||| ||||||||    
T  28854785 taattttgataactgaaataaaatgtgaggattttaaaaacatttaataaaatgtagggagtattctttaaatgggcgcaaaatataaggattaaaaaca 28854686  T
Q  120 t 120  Q
    |    
T  28854685 t 28854685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 17075330 - 17075227
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||| ||||   |||||||| | || | || |||||  |||||| |||| ||  ||||||||||| ||  |||||||||||||||||||||||    
T  17075330 gactaattttgttaacggggataaaatgtgaggattttaaaaacttttaatgaaatgtagggactattcttcaaagcggcgcaaaatataaggactaaaa 17075231  T
Q  117 acat 120  Q
    ||||    
T  17075230 acat 17075227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 16755650 - 16755714
Alignment:
Q  55 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||||||||||| |||| || |||||||||||| ||  |||||||||||| |||| |||||||||    
T  16755650 aaaaatatttaatgaaatatagagactattcttcaaagtggcgcaaaatat-aggattaaaaacat 16755714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 18152865 - 18152764
Alignment:
Q  19 ctaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaac 118  Q
    ||||||||||||||  ||||||||| | || | || || || |||||| ||||| ||  ||||||||||| || ||||||||||| |||| ||| |||||    
T  18152865 ctaattttgataacggagataaaatgtgaggattttaagaacatttaacaaaatgtagggactattcttcaaaggggcgcaaaatgtaagaactgaaaac 18152766  T
Q  119 at 120  Q
    ||    
T  18152765 at 18152764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 17075596 - 17075696
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||    ||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| ||  |||||||||| ||||||||||||    
T  17075596 gactaattttgatagtggagataaaatgtgaggattttaaaaacatttaatgaaatgtagggactattcttcaaagaggcgcaaaatgtaaggactaaaa 17075695  T
Q  117 a 117  Q
    |    
T  17075696 a 17075696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 42750097 - 42750205
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||||||||| |||||  ||||||||| | || | || |||||  |||||| |||| ||  ||||||||||| || ||||| ||||| ||| ||||||||    
T  42750097 gactaattttaataacggagataaaatgtgaggattttaaaaacgtttaatgaaatgtagggactattcttcaaaggggcgtaaaatgtaaagactaaaa 42750196  T
Q  117 acatttaac 125  Q
    | |||||||    
T  42750197 atatttaac 42750205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 9880763 - 9880872
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| ||||||||||||||||| ||||||||| | |||| || ||||| |||||||||||| || | |||||||||| || | ||||||||| |||| |    
T  9880763 agcagggactaattttgataacagagataaaatgtgagaattttaaaaacatttaataaaatatagaaactattcttcaaatgagcgcaaaatgtaagaa 9880862  T
Q  111 ctaaaaacat 120  Q
     |||||||||    
T  9880863 ttaaaaacat 9880872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 31436356 - 31436461
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||||||||||||||||||||  ||||||||| | | || || ||||| |||||||||||| ||  ||||||||||| ||||| | |||||| ||||||    
T  31436356 agcagagactaattttgataacggagataaaatgtgataattttaaaaacatttaataaaatatagtgactattcttcaaaaggacacaaaatgtaagga 31436455  T
Q  111 ctaaaa 116  Q
    ||||||    
T  31436456 ctaaaa 31436461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 50359412 - 50359521
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||||||||||||||||||||| ||||||||| | || | || ||||| ||||||| ||||  || ||||||||||| || ||||||||||| ||||||    
T  50359412 agcagagactaattttgataacagagataaaatgtgaggattttaaaaacatttaatgaaataaaaggactattcttcaaatgggcgcaaaatgtaagga 50359511  T
Q  111 ctaaaaacat 120  Q
     || ||||||    
T  50359512 atataaacat 50359521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 19895778 - 19895850
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttc 88  Q
    ||||||||||||||||| |||||||||||| |||| || ||||| |||||||||||| || ||||||||||||    
T  19895778 agactaattttgataacgaagataaaatatgagaattttaaaaacatttaataaaatgtagagactattcttc 19895850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 18180257 - 18180360
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||||| || | || ||||| |||||||||||| ||  ||||||||||| ||  |||||||||||||| || |||||    
T  18180257 gactaattttgataacggagataaaatatgaggattttaaaaacatttaataaaatgtatggactattcttcaaagtggcgcaaaatataaagattaaaa 18180356  T
Q  117 acat 120  Q
    ||||    
T  18180357 acat 18180360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 5683534 - 5683643
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| |||||||||||||| |  ||||||||||  || | || ||||||||||||| |||| ||  ||||||||||| ||| | || ||||||||||||    
T  5683534 agcagtgactaattttgataccggagataaaatacgaggattttaaaaatatttaatgaaatgtagggactattcttcaaaaagacgtaaaatataagga 5683633  T
Q  111 ctaaaaacat 120  Q
    ||||||||||    
T  5683634 ctaaaaacat 5683643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 48155091 - 48154982
Alignment:
Q  10 gagcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaag-ggcgcaaaatataag 108  Q
    ||||||||| ||||||||||| |  ||||||||||| || | || ||||| |||||||||||| ||| ||||||||||  |||| |||| ||||||||||    
T  48155091 gagcagagattaattttgatatcggagataaaatatgaggattttaaaaacatttaataaaatgtaaggactattctt--aaagcggcgtaaaatataag 48154994  T
Q  109 gactaaaaacat 120  Q
    || |||||||||    
T  48154993 gattaaaaacat 48154982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 5172856 - 5172753
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||||| |||||||||  ||||||||| |||| | || ||||| ||||||| |||| || |||||||||||| || | ||||||||| |||| |||||||    
T  5172856 gactaaatttgataacgtagataaaatgtaaggattttaaaaacatttaatgaaatgtagagactattcttcaaatgagcgcaaaatgtaagaactaaaa 5172757  T
Q  117 acat 120  Q
    ||||    
T  5172756 acat 5172753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 9880595 - 9880492
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||||||||||||||| |||||||||| | || | || ||||| ||||||| |||| || ||||| |||||| || ||  ||||||| ||||||||||||    
T  9880595 gactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaatgtagagacttttcttcaaagggatgcaaaatgtaaggactaaaa 9880496  T
Q  117 acat 120  Q
    ||||    
T  9880495 acat 9880492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 6751326 - 6751436
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcg-caaaatataagg 109  Q
    ||||||||||||||||||||||||||||||||| | || | || ||||| ||||||| |||| ||| |||| |||||  || || || |||||| ||| |    
T  6751326 agcagagactaattttgataacaaagataaaatgtgaggattttaaaaaaatttaatgaaatgtaaggacttttctttaaagggacgccaaaatgtaatg 6751425  T
Q  110 actaaaaacat 120  Q
    |||||||||||    
T  6751426 actaaaaacat 6751436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 18179993 - 18179887
Alignment:
Q  14 agagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggacta 113  Q
    |||||||||||||||||||  ||||||||| | || | || ||||| | ||||| |||| ||| ||||||| ||| || ||| ||||||| |||||||||    
T  18179993 agagactaattttgataacggagataaaatgtgaggattttaaaaacaattaatgaaatataaggactatttttcaaaggggtgcaaaatgtaaggacta 18179894  T
Q  114 aaaacat 120  Q
    |||||||    
T  18179893 aaaacat 18179887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 3591310 - 3591416
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| |||||||||| ||||   ||||||||| | || | || ||||| |||||||||||| ||  ||||||||||| || | ||||||||| ||||||    
T  3591310 agcagggactaatttttataatggagataaaatgtgaggattttaaaaacatttaataaaatgtatggactattcttcaaatgagcgcaaaatgtaagga 3591409  T
Q  111 ctaaaaa 117  Q
    |||||||    
T  3591410 ctaaaaa 3591416  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 4288475 - 4288517
Alignment:
Q  78 gactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  4288475 gactattcttcaaaggggcgcaaaatataaggactaaaaacat 4288517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 50359198 - 50359136
Alignment:
Q  55 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 117  Q
    ||||| ||||||| |||| ||  ||||||||||||||  ||||||||||||||||||||||||    
T  50359198 aaaaacatttaatgaaatgtagggactattcttcgaattggcgcaaaatataaggactaaaaa 50359136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 1500998 - 1501063
Alignment:
Q  55 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||| ||||||| |||| ||  ||||||||||| |||| |||||||||||| |||||||||||||    
T  1500998 aaaaacatttaatgaaatgtagggactattcttcaaaagagcgcaaaatatagggactaaaaacat 1501063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 37927593 - 37927528
Alignment:
Q  55 aaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    ||||||||||||| |||| || |||||||||||| | || ||| ||||||||| ||||||||||||    
T  37927593 aaaaatatttaatcaaatgtagagactattcttcaatagagcgtaaaatataaagactaaaaacat 37927528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 48155258 - 48155361
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||| ||||||||| | |  | || ||||| ||||||| |||| ||   || ||||||| || | |||||||||||||||| |||||    
T  48155258 gactaattttgataacatagataaaatgtgaagattttaaaaacatttaatgaaatataggaacaattcttcaaaggagcgcaaaatataaggattaaaa 48155357  T
Q  117 acat 120  Q
    ||||    
T  48155358 acat 48155361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 19895512 - 19895408
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 115  Q
    |||||||||||||||||  ||||||||| | ||   || ||||| ||||||| |||| ||  ||||||||||| || | ||  ||||| |||||||||||    
T  19895512 agactaattttgataacggagataaaatgtgagggttttaaaaacatttaattaaatgtatggactattcttcaaacgagcataaaatgtaaggactaaa 19895413  T
Q  116 aacat 120  Q
    |||||    
T  19895412 aacat 19895408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 43933551 - 43933451
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    |||||||||||||||| |||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| || |||| |||||| ||||||||||||    
T  43933551 gactaattttgataacgaagataaaatgtgaggattttaaaaatatttaatgaaatgtagggactattcttcaaacgggcacaaaatgtaaggactaaaa 43933452  T
Q  117 a 117  Q
    |    
T  43933451 a 43933451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 13637759 - 13637862
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||| ||||||||||  ||||||||| | || | || ||||||||||||| |||| || |||||||||||| || ||||||||||| ||||||||| ||    
T  13637759 gactagttttgataacggagataaaatgtgaggattttaaaaatatttaatgaaatgtagagactattcttcaaaggggcgcaaaatgtaaggactagaa 13637858  T
Q  117 acat 120  Q
    ||||    
T  13637859 acat 13637862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 22814413 - 22814304
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| |||||||||||||||| |||||||||| | || | || ||||| ||||||| |||| ||  ||||||||||| || ||||||||||| |||| |    
T  22814413 agcagggactaattttgataacgaagataaaatgtgaggattttaaaaacatttaatgaaatgtatggactattcttcaaaggggcgcaaaatgtaagaa 22814314  T
Q  111 ctaaaaacat 120  Q
     |||||||||    
T  22814313 ttaaaaacat 22814304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 44504368 - 44504467
Alignment:
Q  20 taattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaaca 119  Q
    |||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||| ||||||||||| || ||| ||||||| |||||||||||||||    
T  44504368 taattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaaggactattcttcaaaggggtgcaaaatgtaaggactaaaaaca 44504467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 51471450 - 51471343
Alignment:
Q  13 cagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggact 112  Q
    ||||||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| || | |||||||||| || || |||||||| |||| |||    
T  51471450 cagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtagaaactattcttcaaagggacgcaaaatgtaagaact 51471351  T
Q  113 aaaaacat 120  Q
    || |||||    
T  51471350 aagaacat 51471343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 43933708 - 43933809
Alignment:
Q  18 actaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 117  Q
    |||||||||||||||| ||||||||||| || | || ||||| ||||||| |||  || |||||||| ||| || || |||||||| | |||||||||||    
T  43933708 actaattttgataacagagataaaatatgaggattttaaaaacatttaatgaaa-gtagagactatttttcaaatggacgcaaaatgtgaggactaaaaa 43933806  T
Q  118 cat 120  Q
    |||    
T  43933807 cat 43933809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 44504203 - 44504098
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||||| | || | || ||||||||||||| |||| ||  ||||||||||| || || | |||||| |||| ||||||     
T  44504203 gactaattttgataacggagataaaatgtgaggattttaaaaatatttaatgaaatgtagggactattcttcaaatggacacaaaatgtaagaactaaag 44504104  T
Q  117 acattt 122  Q
    ||||||    
T  44504103 acattt 44504098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 25770694 - 25770798
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaa 115  Q
    ||||||||||| |||||  |||||||||||||  | || ||||| |||||||||||| ||   |||||||||| || | | ||||||| |||||| ||||    
T  25770694 agactaatttttataacggagataaaatataaatattttaaaaacatttaataaaatgtaggaactattcttcaaatgagtgcaaaatgtaaggattaaa 25770793  T
Q  116 aacat 120  Q
    |||||    
T  25770794 aacat 25770798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 9218489 - 9218595
Alignment:
Q  13 cagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggact 112  Q
    ||||||||||||| |||||| |||||||||| | |  | || ||||| ||||||| |||| ||  ||||||||||| || | ||||||||| ||| ||||    
T  9218489 cagagactaattt-gataacgaagataaaatgtgatgattttaaaaacatttaatgaaatatagggactattcttcaaaggagcgcaaaatgtaatgact 9218587  T
Q  113 aaaaacat 120  Q
    ||||||||    
T  9218588 aaaaacat 9218595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 50732342 - 50732233
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| ||||||||||||||||  |||||||||   || | || ||||||||||||| |||| ||  ||||||| ||| || | ||||||||| ||||||    
T  50732342 agcagggactaattttgataacggagataaaatgcgaggattttaaaaatatttaatgaaatgtatggactatttttcaaaggagcgcaaaatgtaagga 50732243  T
Q  111 ctaaaaacat 120  Q
      ||||||||    
T  50732242 taaaaaacat 50732233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 50780513 - 50780622
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||| ||||||||||||||||  |||||||||   || | || ||||||||||||| |||| ||  ||||||| ||| || | ||||||||| ||||||    
T  50780513 agcagggactaattttgataacggagataaaatgcgaggattttaaaaatatttaatgaaatgtatggactatttttcaaaggagcgcaaaatgtaagga 50780612  T
Q  111 ctaaaaacat 120  Q
      ||||||||    
T  50780613 taaaaaacat 50780622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 13637587 - 13637531
Alignment:
Q  16 agactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaat 72  Q
    ||||||||||||||||| |||||||||||| |  | || ||||||||||||| ||||    
T  13637587 agactaattttgataacgaagataaaatatgaagattttaaaaatatttaatgaaat 13637531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 37172192 - 37172092
Alignment:
Q  17 gactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaa 116  Q
    ||||||||||||||||  ||||||| | | || | || ||||| ||||||| |||| || |||||||||||  ||   ||||||||| ||||||||||||    
T  37172192 gactaattttgataacggagataaactgtgaggattttaaaaacatttaatgaaatgtagagactattctttaaataagcgcaaaatgtaaggactaaaa 37172093  T
Q  117 a 117  Q
    |    
T  37172092 a 37172092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 45728335 - 45728399
Alignment:
Q  56 aaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaacat 120  Q
    |||||||||||| |||| ||  ||||||||||| || || | |||||| ||||||||||||||||    
T  45728335 aaaatatttaatgaaatgtatggactattcttcaaagggacacaaaatgtaaggactaaaaacat 45728399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 34909 - 34800
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||||||||||||||||||||  ||||||||| | || |||| ||||| ||||||| |||| ||  ||| ||| ||| ||  | |||||||||||||||    
T  34909 agcagagactaattttgataacggagataaaatgtgagtactttaaaaacatttaatgaaatgtatggaccattattcaaatagacgcaaaatataagga 34810  T
Q  111 ctaaaaacat 120  Q
    ||||||||||    
T  34809 ctaaaaacat 34800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 35172 - 35274
Alignment:
Q  18 actaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataaggactaaaaa 117  Q
    ||||||||| |||||  ||||||||| | || | || ||||| ||| |||||||| || |||||||||||| || || |||||||| |||||||||||||    
T  35172 actaattttcataaccgagataaaatgtgaggattttaaaaacattcaataaaatgtagagactattcttcaaagggacgcaaaatgtaaggactaaaaa 35271  T
Q  118 cat 120  Q
    |||    
T  35272 cat 35274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 108095 - 108204
Alignment:
Q  11 agcagagactaattttgataacaaagataaaatataagaacttcaaaaatatttaataaaatttaaagactattcttcgaaagggcgcaaaatataagga 110  Q
    ||||||||||||||||||||||  ||||||||| | || | || ||||| ||||||| |||| ||   |  ||||||| |||||||||||||| ||||||    
T  108095 agcagagactaattttgataacggagataaaatgtgaggattttaaaaacatttaatgaaatgtaggaataattcttcaaaagggcgcaaaatgtaagga 108194  T
Q  111 ctaaaaacat 120  Q
    ||||||||||    
T  108195 ctaaaaacat 108204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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