View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_40 (Length: 316)
Name: NF12877_low_40
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 35481154 - 35480875
Alignment:
| Q |
20 |
gaagactgagttagtagcaaagcgcgttggctatcacaataaataacaagaacctcggaaaaagtcacatgaagatcccgtggtagacaaagaagcctct |
119 |
Q |
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| T |
35481154 |
gaagaccgagttagtagcaaagcgcgttggctatcacaataaataacaagaacctcggaaaaagtcacatgaagatcccgtggtagacaaagaagcctct |
35481055 |
T |
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| Q |
120 |
gaatttcacaagtagcagctgcaagtgctcaaattctgcttcactcgaagatctgaacacaatattttgtttttcagtgcgtcaagatataagagttgaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35481054 |
gaatttcacaagtagcagctgcaagtgctcaaattctgcttcactcgaagatctgaacacaatattttgtttttcagtgcgtcaagatataagagttgaa |
35480955 |
T |
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| Q |
220 |
cctaaaaagaaacacatgtcagataatcaacaccaaagaacccataagatgcataatggaagaaacgggaaagaaaattc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35480954 |
cctaaaaagaaacacatgtcagataatcaacaccaaagaacccataagatgcataatggaagaaacgggaaagaaaattc |
35480875 |
T |
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