View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_42 (Length: 306)
Name: NF12877_low_42
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 26192111 - 26191841
Alignment:
| Q |
18 |
gttagtgatcagaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttggga |
117 |
Q |
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| T |
26192111 |
gttagtgatgagaatggagataaaatggaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttggga |
26192012 |
T |
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| Q |
118 |
ttaaggctgggaggaattctccagtgtgtcactttttccctgtgaaccatcttatgtggatcccaatgtagccatcccaaagccactatgtgaaatgagt |
217 |
Q |
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| T |
26192011 |
ttaaggctgggaagaattctccagtgtgtcactttttccctgtgaaccatcttatgtggattccaatctagccatcccaaagccactatgtgaaatgagt |
26191912 |
T |
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| Q |
218 |
ttgtctatctagatttgtataataaaggttttatcaatcttaccaatgatgctggtgagtattgagtgatg |
288 |
Q |
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| T |
26191911 |
ttgtctatctagatttgtataataaaggttttatcaatcttaccaatgatgctggtgagtgttgagtgatg |
26191841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 288
Target Start/End: Complemental strand, 26179828 - 26179564
Alignment:
| Q |
22 |
gtgatcagaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttgggattaa |
121 |
Q |
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| T |
26179828 |
gtgatgagaatggagataaaatggaagctgttggaatttgccatttggacacatctgattggaacccagatcatataatatttaggcagcttagcattaa |
26179729 |
T |
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| Q |
122 |
ggctgggaggaattctccagtgtgtcactttttccctgtgaaccatcttatgtggatcccaatgtagccatcccaaagccactatgtgaaatgagtttgt |
221 |
Q |
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| T |
26179728 |
ggccgggaagaactctccagtgtgtcacttcttacctgtgaaccatcttctgtgggttccaatgcaacc-ttcaaaagccaccatgtgaagtgagttggt |
26179630 |
T |
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| Q |
222 |
ctatctagatttgtataataaaggttttatcaatcttaccaatgatgctggtgagtattgagtgatg |
288 |
Q |
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| T |
26179629 |
ctatctagacttgtataataaagg-tttatcaatctcactagtgatggttgtgagtgatgagtgatg |
26179564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 29 - 257
Target Start/End: Complemental strand, 26162024 - 26161798
Alignment:
| Q |
29 |
gaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttgggattaaggctggg |
128 |
Q |
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| T |
26162024 |
gaatggagataaaatggaagttgttggaatttgtcatttggacacatctgattggaacccagatcatattgtatttaggcagcttagggttaccgctggg |
26161925 |
T |
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| Q |
129 |
aggaattctccagtgtgtcactttttccctgtgaaccatcttatgtggatcccaatgtagccatcccaaagccactatgtgaaatgagtttgtctatcta |
228 |
Q |
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| T |
26161924 |
aagaactctccaatgtgtcacttcttacctgtgaaccatcttatgtgggttccaatgcagcc-ttcaaaagccaccatgtgaagtgagttggtctatcta |
26161826 |
T |
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| Q |
229 |
gatttgtataataaaggttttatcaatct |
257 |
Q |
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| T |
26161825 |
aacttgtataataaagg-tttatcaatct |
26161798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 25648875 - 25649029
Alignment:
| Q |
22 |
gtgatcagaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattcaaacaacttgggattaa |
121 |
Q |
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| T |
25648875 |
gtgatgagaatggagataaaatggaagctcttggaatgtgtcacttggatacatctgactggaaccctgatcatgagttattcaagacactaagaatcaa |
25648974 |
T |
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| Q |
122 |
ggctgggaggaattctccagtgtgtcactttttccctgtgaaccatcttatgtgg |
176 |
Q |
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| T |
25648975 |
gcctgggaagaattcttcagcgtgtcacttctttcctgtaaaccatcttttgtgg |
25649029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 25929041 - 25928965
Alignment:
| Q |
29 |
gaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcatattatattca |
105 |
Q |
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| T |
25929041 |
gaatggagataaaatagaagctgtaggaatgtgccatttggatacatctgattggaatccagatcatataatattca |
25928965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 32189731 - 32189799
Alignment:
| Q |
28 |
agaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcata |
96 |
Q |
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| T |
32189731 |
agaatggagataaaatggaagctcttggaatgtgtcatttggatacatctggttggaacccaaatcata |
32189799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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