View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12877_low_43 (Length: 306)
Name: NF12877_low_43
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_43 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 31560404 - 31560120
Alignment:
| Q |
13 |
atgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaagcattttcttcaaaa-------gcaatatagggattgttatgtagatagt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31560404 |
atgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaagcattttcttcaaaactcaaaagcaatatagggattgttatgtagatagt |
31560305 |
T |
|
| Q |
106 |
gctagtnnnnnnnntgttaagttaagctagaagatcaccaagaattctgatataaatgtagccaagttctactttggatcatcgtggaccaacgcttaaa |
205 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31560304 |
gctagtaaaaaaa-tgttaagttaagctagaagatcaccaagaattctgatataaatgtagccaagttctactttggatcatcatggaccaacgcttaaa |
31560206 |
T |
|
| Q |
206 |
aactgcacaaaacatacgttgccagcgatagtaacctgatccttgtcggtttgacaaaaataaaataaacaaatatgagttgattt |
291 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31560205 |
aactgcacaaaacttacgcagccagcgatagtaacctgatccttgtcggtttgacaaaaataaaataaacaaatatgagttgattt |
31560120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 31557568 - 31557279
Alignment:
| Q |
13 |
atgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaagcattttcttcaaaa-------gcaatatagggattgttatgtagatagt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| || |
|
|
| T |
31557568 |
atgaatgagaagtaacttacttaaacccttgcaagtaaatagtatctaaaacattttcttcaaaactcaaaagcaacatagggattgttatgtagacagc |
31557469 |
T |
|
| Q |
106 |
gctagtnnnnnnnntgttaagttaagctagaagatcaccaagaattctgatataaatgtagccaagttctactttggatcatcgtggaccaacgcttaaa |
205 |
Q |
| |
|
|||| | |||||||||||||| ||||||||||||||||||||||| |||| || |||||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
31557468 |
gctactaaaaaat-tgttaagttaagcttgaagatcaccaagaattctgatacaaatataagcaagttcttctttggatcaccgtggaccaacacttaaa |
31557370 |
T |
|
| Q |
206 |
aactgcacaaaacatacgttgccagcgatagtaacctgatccttgtcggtttgaca----aaaataaaataaacaaatatgagttgatttt |
292 |
Q |
| |
|
||||||||||||| |||| || ||||| | ||| ||||||||||| ||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
31557369 |
aactgcacaaaacttacgcagctagcgacattaatctgatccttgttggtttgacaaaaaaaaaaaaaaaaaacaaatatgagttgatttt |
31557279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 31876470 - 31876523
Alignment:
| Q |
25 |
taacttacttaaacccttgcaagtaaatagtatctaaagcattttcttcaaaag |
78 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
31876470 |
taacttccttaaacccttgcaagtaaatatcacctaaagcactttcttcaaaag |
31876523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University