View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_46 (Length: 300)
Name: NF12877_low_46
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_46 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 90 - 281
Target Start/End: Original strand, 11528848 - 11529039
Alignment:
| Q |
90 |
tcacctttaagctagtttctaaacttgcattccatatagattgttttatttctacctatattatgtttgattacactgatagagtatgcaaatcaaactc |
189 |
Q |
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| T |
11528848 |
tcacctttaagctagtttctaaacttgcattccatatagattgttttatttctacctatattatgtttgattacactgatagagtatgcaaatcaaactc |
11528947 |
T |
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| Q |
190 |
tttctataaattttgggaaattaaagcaaaggagtttttcataatgacgttttcagttgatgatccaggaaccaattaaattgataattttc |
281 |
Q |
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| T |
11528948 |
tttctataaattttgggaaattaaagcaaaggagtttttcataatgacgttttcagttgatgatccaggaaacaattaaattgataattttc |
11529039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 11528702 - 11528776
Alignment:
| Q |
16 |
aaaatcacacctaaagtatccatccatttcatctactttgcctagattctatggttgagatataacttatactat |
90 |
Q |
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| T |
11528702 |
aaaatcacacctaaagtatccatccatttcatctactttgcctagattctatggttgagatataacttatactat |
11528776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 9369328 - 9369267
Alignment:
| Q |
130 |
ttgttttatttctacctatattatgtttgattacactgatagagtatgcaaatcaaactctt |
191 |
Q |
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| T |
9369328 |
ttgttttatttctacttatattctgttttattacactgttagagtatgcaaaccaaactctt |
9369267 |
T |
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