View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_47 (Length: 296)
Name: NF12877_low_47
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 1331596 - 1331857
Alignment:
| Q |
19 |
gttatcatatgatggcattccaacatcacagagagggtcaaatcttgtttcctaaaggccgaatcctctaggatcaagtcatgttttctcatgtttttct |
118 |
Q |
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| T |
1331596 |
gttatcatatgatggcattccaacatcacagagagggtcaaatcttgtttcctaaaggcggaatcctctaggatcaagtcatgttttctcatgtttttct |
1331695 |
T |
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| Q |
119 |
cattgtaaaaattatttatgctatatcattgtatatctatcaaactctaaagtttaaaactcttttgaatatatttatttgaagttatctgttaaatttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1331696 |
cattgtaaaaattatttatgctatatcattgtatatctatcaaactctaaagtttaaaactcttttgaatatatttatttgaagttatctgttaaatttc |
1331795 |
T |
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| Q |
219 |
cnnnnnnnnnnnnnnnnnnccacagaaacttccttcatgtttggtgtaagcaaccaagaggg |
280 |
Q |
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| T |
1331796 |
ctttttgtttttggtttttccacagaaacttccttcatgtttggtgtaagcaaccaagaggg |
1331857 |
T |
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