View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_50 (Length: 273)
Name: NF12877_low_50
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_50 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 129 - 273
Target Start/End: Complemental strand, 34353777 - 34353642
Alignment:
| Q |
129 |
attcaatgtaaaccttttactcatactaataccaacatttttagtttcatatccggtttcaactttcagaattgagacctggannnnnnngcactcaaac |
228 |
Q |
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| T |
34353777 |
attcaatggaaaccttttactcatactaataccaacatttttagtttcatatccggtttcaactttcagaattgagacctggatttttttg--------- |
34353687 |
T |
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| Q |
229 |
cactcaaggcattaaattatatctagactttacatcttagttctt |
273 |
Q |
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| T |
34353686 |
cactcaaggcattaaattatatctagaatttacatcttagttctt |
34353642 |
T |
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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 34354038 - 34353937
Alignment:
| Q |
19 |
agatcatccacattggatcaagaacaaccatacaaatatgagagagacgccaccatcatatctctatctaaaaccttacaacatcaagttaat-ggcgat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34354038 |
agatcatccacattggatcaagaacaaccatacaaat--gagagagacaccaccatcatatctctatctaaaaccttacaacatcaagttaatgggcgat |
34353941 |
T |
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| Q |
118 |
tcac |
121 |
Q |
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|||| |
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| T |
34353940 |
tcac |
34353937 |
T |
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