View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_53 (Length: 257)
Name: NF12877_low_53
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 40679201 - 40679331
Alignment:
| Q |
116 |
aattagacaaaagtgtatccctcacaaacagttccatcacaaattctatcacttggtttaaaacactggtttagttacggataatagagatatatttatc |
215 |
Q |
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| T |
40679201 |
aattagacaaaagtgtatccctcacaaacagttccatcacaaattctatcacttggtttaaaacactggtttagttacggataatagagatatatttatc |
40679300 |
T |
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| Q |
216 |
catcactagagtatttcatcattctatctct |
246 |
Q |
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| T |
40679301 |
catcactagagtatttcatcattctatctct |
40679331 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 40679134 - 40679200
Alignment:
| Q |
18 |
gttcgccgaagatgttcaattctcacatgacattgtcgacaaattaggcgattaaaataccttgtaa |
84 |
Q |
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| T |
40679134 |
gttcgtcgaagatgttcaatcctcacatggcattgtcgacaaattaggcgattaaaataccttgtaa |
40679200 |
T |
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