View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_6 (Length: 586)
Name: NF12877_low_6
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 13870501 - 13870096
Alignment:
| Q |
20 |
aggactctgttgtttttgagtgtgtatgtgttcagaggtgtcaggaaggaggaagttgaggttaccgtggatgacaacactctcgccgttaaggatgctc |
119 |
Q |
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| T |
13870501 |
aggactctgttgtttttgagtgtgtatgtgttcagaggtgtcaggaaggaggaagttgaggttactgtggatgacaacactctcaccgttaaggatgctc |
13870402 |
T |
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| Q |
120 |
ttcctggccggaatcagttcaatgcaacaattaacttaactgggaagtaggctattggtctttggtttgacgaagaaaactctttgtgtgggaaaccatt |
219 |
Q |
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| T |
13870401 |
ttcctggccggaatcagttcaatggaacaatcaacttaactgggaagtaggctatttgtctttggtttgacgaagaaaactct--gtgtgggaaaccatt |
13870304 |
T |
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| Q |
220 |
ttgtgcaatagtcttttggaggtaattaggaattggagaagagtgggaggagaggataggtggtggtggaagtcggaggagacaggtagttttatggtga |
319 |
Q |
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| T |
13870303 |
ttgtgcaatagtcttttggaggtaattgggaattggagaagagtgggaggagaggataggtggtggtggaagtcggaggagacaggtagttttatggtga |
13870204 |
T |
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| Q |
320 |
gttcaacctacaagatcttggagaatttgttgataccgagagaggaattgtgtggtaccaaagaaagggtgtttgggtccgtttggaaaagcctggctcc |
419 |
Q |
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| T |
13870203 |
gttcaacctacaagatcttggagaatttgttgataccgagagaggaattgtgtggtaccaaagaaagggtgtttgggtccgtgtggaaaagcctggcttc |
13870104 |
T |
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| Q |
420 |
tacaaagg |
427 |
Q |
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| T |
13870103 |
tacaaagg |
13870096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 424 - 566
Target Start/End: Complemental strand, 13870037 - 13869898
Alignment:
| Q |
424 |
aaggaggagagttt-gcctttagatgactcagtgaattgtgttttctgcaatctgagggctgaaatctcctcacatattttccttcattgtcagtttgcc |
522 |
Q |
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| T |
13870037 |
aaggaggagagttttgcctttagatgactcagtgaattgtgttttctgcaatctgagggctgaaatctcctcacatattttccttcattgtcagtttgcc |
13869938 |
T |
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| Q |
523 |
ttcaaggtatggtctaattaaggtgcttggttggttacatatta |
566 |
Q |
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| T |
13869937 |
ttcaaggtatggtc----taaggtgcttggttggttacatatta |
13869898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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