View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_66 (Length: 239)
Name: NF12877_low_66
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 6568315 - 6568102
Alignment:
| Q |
1 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||| |||||| || ||||||||||||||| |
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| T |
6568315 |
ataaactactttttgtagggattcaaaccattgttgttatttttgtgctagtaacttctgtaaagcaaaggaacaacaaccctttggtttttactgctat |
6568216 |
T |
|
| Q |
101 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataannnnnnnnaatctctgatcatctt |
200 |
Q |
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||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
6568215 |
gttgtgttgttttcatcatgttggatctcactcgcacaattgaaatgtgactgtacttgtgctcaaattctaataa--tattttaatctctaatcatctt |
6568118 |
T |
|
| Q |
201 |
tgaaagcttcaattct |
216 |
Q |
| |
|
|||| ||||||||||| |
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| T |
6568117 |
tgaatgcttcaattct |
6568102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 6598515 - 6598340
Alignment:
| Q |
1 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
100 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||| |||||||| || |||||| ||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
6598515 |
ataagctactttttgtagggatccaaaccattgttgttaattttgttctagtaacttctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6598416 |
T |
|
| Q |
101 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataa |
176 |
Q |
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| T |
6598415 |
gttgtgttgttttcatcatgttggacctcactagcacaattgaaatgtgactatacttgtgctcaaattctaataa |
6598340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 6653189 - 6652977
Alignment:
| Q |
1 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
100 |
Q |
| |
|
|||| ||||||| |||||||||| |||||| |||||||| || |||||| |||| |||||||||||||||| |||||| |||||||||||||||||| |
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| T |
6653189 |
ataagctactttttgtagggatttaaaccattgttgttaattttgttctagtaacctctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6653090 |
T |
|
| Q |
101 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataannnnnnnnaatctctgatcatctt |
200 |
Q |
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||||| ||||||| ||||| ||||| |||| | |||||||||||| |||||||| |||||||| |||||||||||| ||||||| || ||||| |
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| T |
6653089 |
gttgtcttgtttttatcatgttggatctcattagcacaattgaaatgtgactgt-cttgtgctaaaattctaataa-tattttaaatctctaataatctt |
6652992 |
T |
|
| Q |
201 |
tgaaagcttcaattc |
215 |
Q |
| |
|
||||||||||||||| |
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|
| T |
6652991 |
tgaaagcttcaattc |
6652977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 6733589 - 6733377
Alignment:
| Q |
1 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
100 |
Q |
| |
|
|||| ||||||| |||||||||| |||||| |||||||| || |||||| |||| |||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
6733589 |
ataagctactttttgtagggatttaaaccattgttgttaattttgttctagtaacctctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6733490 |
T |
|
| Q |
101 |
gttgtgttgttttcatcatattggacctcacttgcacaattgaaacgtgactgtacttgtgctcaaattctaataannnnnnnnaatctctgatcatctt |
200 |
Q |
| |
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||||| ||||||| ||||| ||||| |||| | |||||||||||| |||||||| |||||||| |||||||||||| ||||||| || ||||| |
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|
| T |
6733489 |
gttgtcttgtttttatcatgttggatctcattagcacaattgaaatgtgactgt-cttgtgctaaaattctaataa-tattttaaatctctaataatctt |
6733392 |
T |
|
| Q |
201 |
tgaaagcttcaattc |
215 |
Q |
| |
|
||||||||||||||| |
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|
| T |
6733391 |
tgaaagcttcaattc |
6733377 |
T |
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