View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_68 (Length: 237)
Name: NF12877_low_68
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 5232542 - 5232326
Alignment:
| Q |
7 |
ggatattgttgtagggattccagaattgacaatgtaacaattgaataattgcaaattggtcatctattctaaggtaaaattgatagataagaactcaatt |
106 |
Q |
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| T |
5232542 |
ggatattgttgtaaggattccagaattgacaatgtaacaattgaataattgcaaattggtcatctattctaaggtaaaattgatagataagaactcaatt |
5232443 |
T |
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| Q |
107 |
atagttggtgtttttagtacataaaattaagaagagaaaaggaaagatagaagagactaagtttaaagactcgtcgtcaattttcttcatatctcttatt |
206 |
Q |
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| T |
5232442 |
atagttggtgtttttagtacatatataaaagaagagaaaaggaaagatagaagagactaagtttaaagactcgtcgtcaattttcttcatatctcttatt |
5232343 |
T |
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| Q |
207 |
tagtgacatgtggaaga |
223 |
Q |
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| T |
5232342 |
tagtgacatgtggaaga |
5232326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 5468136 - 5468260
Alignment:
| Q |
31 |
attgacaatgtaacaattgaataattgcaaattggtcatctattctaaggtaaaattgatagataagaactcaattatagttggtgtttttagtacataa |
130 |
Q |
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| T |
5468136 |
attgacaatgtaataattggatgattgcaaattgattatcaattcaaaga-aaaattgatagatgagaacccaattatagctggtgttcttagtacataa |
5468234 |
T |
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| Q |
131 |
aattaagaagagaaaaggaaagatagaaga |
160 |
Q |
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| T |
5468235 |
----aagaagagaaaaggaaagatacaaga |
5468260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 29181832 - 29181706
Alignment:
| Q |
30 |
aattgacaatgtaacaattgaataattgcaaattggtcatctattctaaggtaaaattgatagataagaactcaattatagttggtgtttttagtacata |
129 |
Q |
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| T |
29181832 |
aattgacaacgtaataactggataactccaatttgattatcaattcaaagataaaattgataaatgagaacacaattatagttggtgttcttagtacata |
29181733 |
T |
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| Q |
130 |
aaattaagaagagaaaaggaaagatagaaga |
160 |
Q |
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| T |
29181732 |
a----aagaagagaaaaggaaagatacaaga |
29181706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 4625576 - 4625495
Alignment:
| Q |
51 |
ataattgcaaattggtcatctattctaaggtaaaattgatagataagaactcaattatagttggtgtttttagtacataaaa |
132 |
Q |
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| T |
4625576 |
ataattgcaaattgatcatgaaatcaatggtaaaattgatagatgagaacacaactaaagttggtgttcttagtacataaaa |
4625495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 3756715 - 3756765
Alignment:
| Q |
82 |
aaaattgatagataagaactcaattatagttggtgtttttagtacataaaa |
132 |
Q |
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| T |
3756715 |
aaaattgatagatgagaattcaattagagttggtgttcttagtacataaaa |
3756765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 5700209 - 5700157
Alignment:
| Q |
77 |
aaggtaaaattgatagataagaactcaattatagttggtgtttttagtacata |
129 |
Q |
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| T |
5700209 |
aaggtaaaattgatagattagaactcaattaaaattgatgttcttggtacata |
5700157 |
T |
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