View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_69 (Length: 237)
Name: NF12877_low_69
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 10292532 - 10292751
Alignment:
| Q |
10 |
gatgaagttggacagaaatataaaattacnnnnnnnaagtttttgataacataataaatacaattgaattcccattaaaataaataaatacaatttgcaa |
109 |
Q |
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| T |
10292532 |
gatgaagttggacagaaatctaaaattactttttttaagtttttgataacataataaatacaattgaattcccattaaaataaataaatacaatttgcaa |
10292631 |
T |
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| Q |
110 |
t--------gagtgtgacttgttttgaaaataccaaaactatattaagaaaccgactatacaagtggcccttcttcaatcttgatcattgaattttttaa |
201 |
Q |
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| T |
10292632 |
ttgcattatgaatgtgacttgttttgaaaataccaaaactatattaagaaaccgactatataagtggcccttcttcaatcttgatcattgaattttttaa |
10292731 |
T |
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| Q |
202 |
tattaaatcaacgatgatat |
221 |
Q |
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||||||||||| |||||||| |
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| T |
10292732 |
tattaaatcaatgatgatat |
10292751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 23693737 - 23693519
Alignment:
| Q |
10 |
gatgaagttggacagaaatataaaattacnnnnnnnaagtttttgataacataataaatacaattgaattcccattaaaataaataaatacaatttgcaa |
109 |
Q |
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| T |
23693737 |
gatgaagttggaaagaaatctaaaattactttttt-aagtttttgacaacataataaatacaattgaattcccattaaaataaataaatacaatttgcaa |
23693639 |
T |
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| Q |
110 |
tg--------agtgtgacttgttttgaaaataccaaaactatattaagaaaccgactatacaagtggcccttcttcaatcttgatcattgaattttttaa |
201 |
Q |
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| T |
23693638 |
ttgcattataagtgtgacttgttttgaaaataccaaaactatattaagaaatcgactatacaagtggcccttcttcaatcttgatcattgaattttttaa |
23693539 |
T |
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| Q |
202 |
tattaaatcaacgatgatat |
221 |
Q |
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||||||||||| | |||||| |
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| T |
23693538 |
tattaaatcaatggtgatat |
23693519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 46 - 212
Target Start/End: Complemental strand, 23653783 - 23653609
Alignment:
| Q |
46 |
aagtttttgataacataataaatacaattgaattcccattaaaataaataaatacaatttgcaatg--------agtgtgacttgttttgaaaataccaa |
137 |
Q |
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| T |
23653783 |
aagtttttgataacataataaatacaattgaattcccattaaaataaataaatacaatttgcaattgcattataagtgtgacttgttttgaaaataccaa |
23653684 |
T |
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| Q |
138 |
aactatattaagaaaccgactatacaagtggcccttcttcaatcttgatcattgaattttttaatattaaatcaa |
212 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
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| T |
23653683 |
aactatattaaaaaaccgactatacaagtggcccttcttcaatcttggccgtttaattttttaatattaaatcaa |
23653609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 43014514 - 43014588
Alignment:
| Q |
129 |
aaataccaaaactatattaagaaaccgactatacaagtggcccttcttcaatcttgatcattgaattttttaata |
203 |
Q |
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||||||||||| |||| |||||||| |||||| |||| | ||||||||||||| ||||||||||||||||| |
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| T |
43014514 |
aaataccaaaaatataacaagaaacccactatataagtagtccttcttcaatctaagccattgaattttttaata |
43014588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 40863451 - 40863491
Alignment:
| Q |
172 |
ttcttcaatcttgatcattgaattttttaatattaaatcaa |
212 |
Q |
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| T |
40863451 |
ttcttcaatcttgaccattgaattatttaatattatatcaa |
40863491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 18058295 - 18058335
Alignment:
| Q |
172 |
ttcttcaatcttgatcattgaattttttaatattaaatcaa |
212 |
Q |
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|||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
18058295 |
ttcttcaatcttgaccattgaattgtttaatattatatcaa |
18058335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 45695972 - 45695932
Alignment:
| Q |
172 |
ttcttcaatcttgatcattgaattttttaatattaaatcaa |
212 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
45695972 |
ttcttcaatcttgaccattgaattgtttaatattatatcaa |
45695932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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