View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_7 (Length: 561)
Name: NF12877_low_7
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 32024450 - 32024990
Alignment:
| Q |
1 |
atatgagaatactgtgtatcagtgtatgagaggttgagggttctcaatttttgtgacaataagtggaattattgataggtgatctatctcaattttcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32024450 |
atatgagaatactgtgtatcagtgtatgagaggttgagggttctcaatttttgtgacaataagtggaattattgataggtgatctatctcaattttcaat |
32024549 |
T |
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| Q |
101 |
aaagnnnnnnnnnnnnnnnnnngatatggttgttatgtagaagtagttcttttactgtctagttaatgatttgtgccttaggtagctaagcttatttgct |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32024550 |
aaagttttgttttttaatttttgatatggttgttatgtagaagtagttcttttactgtctagttaatgatttgtgccttaggtagctaagcttatttgct |
32024649 |
T |
|
| Q |
201 |
gttgtgtaagaatgatcctttacaatgcatataatacttagtgcttgtttggtttggcttcgtggtgtacaaaaacccacattaacgcggaagctccact |
300 |
Q |
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| T |
32024650 |
gttgtgtaagaatgatcctttacaatgcatataatacttagtgcttgtttggtttggcttcgtggtgtacaaaaacccacattaacgcggacgctccact |
32024749 |
T |
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| Q |
301 |
tggtagcttctaattttcacttcaaaatgctatgtaatcgtgtggtggcggtgaaaagaagacaaaccaaacatacacttagtttgttcgttgacctttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32024750 |
tggtagcttctaattttcacttcaaaatgctatgtaatcgtgtggtggcggtgaaaagaagacaaaccaaacatacacttagttt----gttgacctttg |
32024845 |
T |
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| Q |
401 |
ataatctttaataatgaggaaaatagatatgtgagtctcttttgggttgaactgtgtgattaaatggaattttgatgatctgtgtgtttgacttcttttg |
500 |
Q |
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| T |
32024846 |
ataatctttaataatgaggaaaatagatatgtgagtctcttttgggttgaactgtgtgattaaatggaattttgatgatctgtgtgtttgacttcttttg |
32024945 |
T |
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| Q |
501 |
ggttgttttctatttaatttgttgatttgggtttatgtttgatgt |
545 |
Q |
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| T |
32024946 |
ggttgttttctatttaatttgttgatttgggtttatgtttgatgt |
32024990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 427 - 512
Target Start/End: Original strand, 32026304 - 32026389
Alignment:
| Q |
427 |
atatgtgagtctcttttgggttgaactgtgtgattaaatggaattttgatgatctgtgtgtttgacttcttttgggttgttttcta |
512 |
Q |
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|||||||| |||||||||| || || ||| ||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
32026304 |
atatgtgaatctcttttggatttaagtgtatgagtaaatgaaattttgatgatctgtgtgtttgacttcattttggttgttttcta |
32026389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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