View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_75 (Length: 229)
Name: NF12877_low_75
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 14983668 - 14983611
Alignment:
| Q |
128 |
ggagtcaaagtctataattcgaatctaaataaatgataacatgcaaacatctctcatt |
185 |
Q |
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| T |
14983668 |
ggagtcaaagtctataattcgaatctaaataaatgataacatgcaaacatctctcatt |
14983611 |
T |
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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14983796 - 14983735
Alignment:
| Q |
1 |
atgattatttgatggattgaatttttagtatttagtatatttggagtctcaagttgcaagac |
62 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14983796 |
atgattatttgatggattgaatttttagtatttagtatatttggagtctcaagttgctagac |
14983735 |
T |
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