View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12877_low_8 (Length: 538)
Name: NF12877_low_8
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12877_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 16 - 520
Target Start/End: Complemental strand, 20429223 - 20428719
Alignment:
| Q |
16 |
atgaaatgacagtgaaaaaaggagccttgacatcaggacaagcacataagtgttatgatatatgaggtttgaaatccaaaactattataaacttataatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20429223 |
atgaaatgacagtgaaaaaaggagccttgacatcaggacaagcacatatgtgttatgatatatgaggtttgaaagccaaaactattataaacttataatg |
20429124 |
T |
|
| Q |
116 |
tttggtcacttgagctaagccaatatccagacttcaaaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagca |
215 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20429123 |
tttgctcacatgagctaagccaatatccagacttcaaaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagca |
20429024 |
T |
|
| Q |
216 |
ttaaaatacataccatgttctggcataaaggagctctaggagccagcggatcaaggcgaggcactccccactagccttctcaattctagctatgttcgtt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20429023 |
ttaaaatacataccatgttctggcataaaggagctctaggagccagcggatcaagacgaggcactccccactagccttctcaattctagctatgttcgtt |
20428924 |
T |
|
| Q |
316 |
tcggtgaaccttggagcaattaccttaattgcaagtacttcaaaatccctaatgtaatttgagacacaagtcacatggtgctgggtttgtaaattgcaat |
415 |
Q |
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|| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20428923 |
tctgtgaaccttggagcaattaccataattgcaggtacttcaaaatccctaatgtaatctgagacacaagtcacatggtgctgggtttgtaaattgcaat |
20428824 |
T |
|
| Q |
416 |
tacaaactataatgaagaattgcaaattgcaatatcaaatagacatgtttaagatcaaatcttactccaagggtaagttgcaatatcaaataaacatgtt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||| |
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| T |
20428823 |
tacaaactataatgaagaattgcaaattgcaatatcaaatagacatgtttaagctcaaaccttactacaagggcaagttgcaatatcaaataaacatgtt |
20428724 |
T |
|
| Q |
516 |
taaac |
520 |
Q |
| |
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||||| |
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| T |
20428723 |
taaac |
20428719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 152 - 368
Target Start/End: Complemental strand, 44439422 - 44439205
Alignment:
| Q |
152 |
aaaattactgcaactttgacaaaataataacacttataattgcaataagaaaacaaaagtagcattaaaatacataccatgttctggcataaaggagctc |
251 |
Q |
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||||||||||||| ||| | ||||| |||||||||| ||| ||||||| |||||| ||||| ||||||||||||||| ||||||||| ||||||||||| |
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| T |
44439422 |
aaaattactgcaatttttataaaattataacacttagaataacaataagcaaacaagagtagtattaaaatacataccgtgttctggcctaaaggagctc |
44439323 |
T |
|
| Q |
252 |
taggagccagcggatc-aaggcgaggcactccccactagccttctcaattctagctatgttcgtttcggtgaaccttggagcaattaccttaattgcaag |
350 |
Q |
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|| |||||||| |||| |||| |||||||||||||| |||||||||||||||||| || | |||||||||||||| ||||| |||||||||||||| | |
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| T |
44439322 |
taagagccagctgatcaaaggtgaggcactccccaccagccttctcaattctagccctggccttttcggtgaaccttagagcagttaccttaattgcagg |
44439223 |
T |
|
| Q |
351 |
tacttcaaaatccctaat |
368 |
Q |
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||||||| || ||||||| |
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| T |
44439222 |
tacttcataaaccctaat |
44439205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 456
Target Start/End: Complemental strand, 16232981 - 16232936
Alignment:
| Q |
411 |
gcaattacaaactataatgaagaattgcaaattgcaatatcaaata |
456 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
16232981 |
gcaattacaaactacaatgaagaattgcaagttgaaatatcaaata |
16232936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 10259168 - 10259124
Alignment:
| Q |
412 |
caattacaaactataatgaagaattgcaaattgcaatatcaaata |
456 |
Q |
| |
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||||||||||||||||||||||||| ||| || |||||||||||| |
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| T |
10259168 |
caattacaaactataatgaagaattacaagttccaatatcaaata |
10259124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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