View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12877_low_81 (Length: 202)

Name: NF12877_low_81
Description: NF12877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12877_low_81
NF12877_low_81
[»] chr4 (13 HSPs)
chr4 (6-202)||(36407303-36407499)
chr4 (6-202)||(36412426-36412622)
chr4 (6-202)||(36399846-36400044)
chr4 (6-199)||(36370641-36370843)
chr4 (70-202)||(36401206-36401338)
chr4 (6-195)||(36376413-36376604)
chr4 (123-202)||(36429568-36429647)
chr4 (123-199)||(36389768-36389844)
chr4 (6-195)||(36435911-36436102)
chr4 (123-202)||(36419605-36419684)
chr4 (6-57)||(36429458-36429509)
chr4 (7-68)||(36389659-36389720)
chr4 (6-55)||(36419465-36419514)
[»] chr5 (1 HSPs)
chr5 (129-193)||(482820-482884)
[»] chr8 (1 HSPs)
chr8 (126-164)||(19357642-19357680)
[»] chr2 (1 HSPs)
chr2 (126-163)||(2711998-2712035)
[»] chr7 (2 HSPs)
chr7 (126-190)||(19939301-19939365)
chr7 (126-190)||(19970440-19970504)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 36407303 - 36407499
Alignment:
Q  6 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtcacacacttatatcacgaaaatatacagatggatatgtatttttatgata 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36407303 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtcacacacttatatcacgaaaatatacagatggatatgtatttttatgata 36407402  T
Q  106 ctctaaccannnnnnnnaattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcagttatggggt 202  Q
    |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36407403 ctctaaccattttgtttaattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggt 36407499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 36412426 - 36412622
Alignment:
Q  6 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtcacacacttatatcacgaaaatatacagatggatatgtatttttatgata 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412426 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtcacacacttatatcacgaaaatatacagatggatatgtatttttatgata 36412525  T
Q  106 ctctaaccannnnnnnnaattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcagttatggggt 202  Q
    |||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36412526 ctctaaccattttgtttaattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggt 36412622  T

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Target: chr4; HSP #3
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 36399846 - 36400044
Alignment:
Q  6 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtcacacacttat-atcacgaaaatatacagatggatatgta-tttttatga 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||| |||||||||    
T  36399846 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtctcaaacacttataatcacgaaattatacagatggatatgtattttttatga 36399945  T
Q  104 tactctaaccannnnnnnnaattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcagttatggggt 202  Q
    |||||||||||        |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36399946 tactctaaccattttgtataattgcagtggatacatgtcacccgaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatggggt 36400044  T

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Target: chr4; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 36370641 - 36370843
Alignment:
Q  6 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtcacacacttat-atcacgaaaatatacagatggatatgtatttttatgat 104  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  36370641 agatgaaattcaagcaagaacaaaaagagtggtcggaacatagtatgtctcaaacacttataatcacgaaattatacagatggatatgtatttttatgat 36370740  T
Q  105 actctaacc--------annnnnnnnaattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcagtta 196  Q
    ||||| | |        |        |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36370741 actcttaacaattttgtataatgtataattgcagtgaatatatgtcaccagaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagtta 36370840  T
Q  197 tgg 199  Q
    |||    
T  36370841 tgg 36370843  T

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Target: chr4; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 70 - 202
Target Start/End: Original strand, 36401206 - 36401338
Alignment:
Q  70 acgaaaatatacagatggatatgtatttttatgatactctaaccannnnnnnnaattgcagtggatatatgtcaccagaatatgcaatggaaggacgata 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  36401206 acgaaaatatacagatggatatgtatttttatgatactctaaccattttgtttaattgcagtggatatatgtcaccagaatatgcaatggaaggacgata 36401305  T
Q  170 ttcagcaaaatctgatgtcttcagttatggggt 202  Q
    |||| | |||||||||||||| |||||||||||    
T  36401306 ttcaacgaaatctgatgtctttagttatggggt 36401338  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 36376413 - 36376604
Alignment:
Q  6 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtcacacacttatatc-acgaaaat-atacagatggatatgtatttt-tatg 102  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||| | |  || || ||| ||||| || |||||||| ||||    
T  36376413 agatgaaatacaagcaagaacaaaaagagtggttggaacatagtatgtttcacacccttataaccattaagattatagagatgaatctgtattttgtatg 36376512  T
Q  103 atactctaaccannnnnnnnaattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcagtt 195  Q
    | ||| |||| |        ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  36376513 agact-taactattttgtataattgcagtggatatatgtcaccggaatatgcaatggaaggacgatattcaactaaatcggatgtcttcagtt 36376604  T

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Target: chr4; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 36429568 - 36429647
Alignment:
Q  123 aattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcagttatggggt 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  36429568 aattgcagcggatatatgtcaccagaatatgcaatggaaggacgatattcaacgaaatctgatgtcttcagttatggggt 36429647  T

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Target: chr4; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 36389768 - 36389844
Alignment:
Q  123 aattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcagttatgg 199  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36389768 aattgcagtggatacatgtcaccggaatatgcaatggaaggacgatattcaacaaaatctgatgtcttcagttatgg 36389844  T

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Target: chr4; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 6 - 195
Target Start/End: Original strand, 36435911 - 36436102
Alignment:
Q  6 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtcacacacttatatc-acgaaaat-atacagatggatatgtatttt-tatg 102  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| ||| || |||||| | |  || || ||| ||||| || |||||||| ||||    
T  36435911 agatgaaatacaagcaagaacaaaaagagtggttggaacatagtatgtttcatacccttataaccattaagattatagagatgaatctgtattttgtatg 36436010  T
Q  103 atactctaaccannnnnnnnaattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcagtt 195  Q
    | ||| |||| |        ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||||||||    
T  36436011 agact-taactattttgtataattgcagtggatatatgtcaccggaatatgcaatggaaggacgatattcaactaaatcggatgtcttcagtt 36436102  T

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Target: chr4; HSP #10
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 36419605 - 36419684
Alignment:
Q  123 aattgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcagttatggggt 202  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  36419605 aattgcagtggatatatgtctccggaatatgcaatgcaaggacgatattcaacaaaatctgatgtcttcagttatggggt 36419684  T

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Target: chr4; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 36429458 - 36429509
Alignment:
Q  6 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtca 57  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  36429458 agatgaaattcaagcaagaacaaaaagagtggtcggaacatagtaggtgtca 36429509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 36389659 - 36389720
Alignment:
Q  7 gatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgtcacacacttatat 68  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||| ||| || |||||||    
T  36389659 gatgaaatccaagcaataacaaaaagagtggttggaacatagtatgtctcatacccttatat 36389720  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 36419465 - 36419514
Alignment:
Q  6 agatgaaatccaagcaagaacaaaaagagtggtcggaacatagtatgtgt 55  Q
    ||||||||| ||||| |||||||||||||| || ||||||||||||||||    
T  36419465 agatgaaattcaagctagaacaaaaagagttgttggaacatagtatgtgt 36419514  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 482884 - 482820
Alignment:
Q  129 agtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtcttcag 193  Q
    |||||||||||| | |||||||||||||||||||||| ||  || |  |||||||||||||||||    
T  482884 agtggatatatggctccagaatatgcaatggaaggactattctccgtgaaatctgatgtcttcag 482820  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 19357642 - 19357680
Alignment:
Q  126 tgcagtggatatatgtcaccagaatatgcaatggaagga 164  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  19357642 tgcagtggatacatgtctccagaatatgcaatggaagga 19357680  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 2712035 - 2711998
Alignment:
Q  126 tgcagtggatatatgtcaccagaatatgcaatggaagg 163  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  2712035 tgcagtggatatatgtctccagaatatgcaatgaaagg 2711998  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 19939301 - 19939365
Alignment:
Q  126 tgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtctt 190  Q
    |||||||| |||||||| ||||||||||||||| ||||||  | ||| |  ||||||||||||||    
T  19939301 tgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctt 19939365  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 19970440 - 19970504
Alignment:
Q  126 tgcagtggatatatgtcaccagaatatgcaatggaaggacgatattcagcaaaatctgatgtctt 190  Q
    |||||||| |||||||| ||||||||||||||| ||||||  | ||| |  ||||||||||||||    
T  19970440 tgcagtggttatatgtctccagaatatgcaatgcaaggactgttttctgataaatctgatgtctt 19970504  T

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