View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12878_high_10 (Length: 345)
Name: NF12878_high_10
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 4 - 325
Target Start/End: Complemental strand, 37697140 - 37696819
Alignment:
| Q |
4 |
ggaggagcagagatggagtcccaaaggaaatcctggttttgatcgtaattagagcaatcaaggctagtattatatccacttttacaaacacaaacaaatc |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697140 |
ggaggaggagagatggagtcccaaaggaaatcctggttttgatcgtaattagagcaatcaaggctagtattatatccacttttacaaacacaaacaaatc |
37697041 |
T |
|
| Q |
104 |
cacttcctggaggagcatatccacacacaccaccactactctcacaactagtacactcagtggtcacaatgtcatcaaaaacaccatgtgtatatttcaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37697040 |
cacttcctggaggagcatatccacacacaccaccactactctcacaactagtacacttagtggtcacaatgtcatcaaaaacaccatgtgtatatttcaa |
37696941 |
T |
|
| Q |
204 |
tgccactccataaacccaatgagtaggatcagtagggttatcaccaagtgacacgaccgaagtataaccactacagtcattctctctaagattcaactcc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696940 |
tgccactccataaacccaatgagtaggatcagtagggttatcaccaagtgacacgaccgaagtataaccactacagtcattctctctaagattcaactcc |
37696841 |
T |
|
| Q |
304 |
cctttgccatcgaggttccccg |
325 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
37696840 |
cctttgccatcgaggttccccg |
37696819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University