View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12878_high_11 (Length: 331)
Name: NF12878_high_11
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 3452174 - 3452477
Alignment:
| Q |
13 |
gagaagtgtgccatatgaattcccttccccaccggaagaaataccgatcgaacaagtcgtcgtgatccccgcgccaccacgctccgccatatataaccag |
112 |
Q |
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| T |
3452174 |
gagaagtgtgccatatgaattcccttccccaccggaagaaataccgatcgaacaagtcgccgtgatccccgcgccaccacgctccgccatatataaccag |
3452273 |
T |
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| Q |
113 |
aatccatcttagaaataaaattagcatttttacatatcaacacagcacctttaccactcaactttgctaacctcaacactcttgtaaaatcctttctccg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3452274 |
aatccatcttagaaataaaattagcatttttacatatcaacacagcacctttaccactcaactttgctaacctcaacactcttgtaaaatcctttctccg |
3452373 |
T |
|
| Q |
213 |
agaatcaacaaccaagaaatctattcctactaaaccatccataacttcttctggttctccaactataatctccggcgacataccagcttctcccatgttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3452374 |
agaatcaacaaccaagaaatctattcctactaaaccatccataacttcttctggttctccaactataatctccggcgacataccagcttctcccatgttt |
3452473 |
T |
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| Q |
313 |
tttg |
316 |
Q |
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|||| |
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| T |
3452474 |
tttg |
3452477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 316
Target Start/End: Original strand, 3462202 - 3462499
Alignment:
| Q |
19 |
tgtgccatatgaattcccttccccaccggaagaaataccgatcgaacaagtcgtcgtgatccccgcgccaccacgctccgccatatataaccagaatcca |
118 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||| |||||||| ||| || |||| |||||||||||||||||| |||||||||||||||| |
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| T |
3462202 |
tgtgccatatgaatccccttccccaccggaagaaacaccgacttaacaagtcttcgcgagcccctcgccaccacgctccgccacatataaccagaatcca |
3462301 |
T |
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| Q |
119 |
tcttagaaataaaattagcatttttacatatcaacacagcacctttaccactcaactttgctaacctcaacactcttgtaaaatcctttctccgagaatc |
218 |
Q |
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|||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
3462302 |
tcttagaaataaaattagcattcttacatatcaatacagaacctttaccactcaactttgctaacctcaacactctagtaaaatcttttctccgagaatc |
3462401 |
T |
|
| Q |
219 |
aacaaccaagaaatctattcctactaaaccatccataacttcttctggttctccaactataatctccggcgacataccagcttctcccatgttttttg |
316 |
Q |
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||||||||||||||||||||| | ||||||||||| ||||| || |||||||| || | || |||||| ||||||||||||||| ||| ||||||| |
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| T |
3462402 |
aacaaccaagaaatctattccgatcaaaccatccatcacttcctccggttctcctaccaaaacctccggtgacataccagcttctaacatattttttg |
3462499 |
T |
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