View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12878_high_15 (Length: 290)
Name: NF12878_high_15
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_high_15 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 41557869 - 41558144
Alignment:
| Q |
15 |
cagagacatacagacattggcattctaggcacataggaaatgggtttaggtctttgaaattgaataagcagattatagataaattgaagggtaggttgag |
114 |
Q |
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| T |
41557869 |
cagagacatacaggcattggcattctaggcacataggaaatgggtttaggtctttgaaattgaataagcagattatagataaattgaagggtaggttgag |
41557968 |
T |
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| Q |
115 |
agatgatgcatataatagtgattttttgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttgggtt |
214 |
Q |
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| T |
41557969 |
aaatgatgcatataatagtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcatgttgggtt |
41558068 |
T |
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| Q |
215 |
ccagcatagaccttcacaatatgttgggagtaaatcaacatttttgttcttgaaaattgtatgaatcaaacaattc |
290 |
Q |
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| T |
41558069 |
ccagcatagaccttcacaatatgttgggagtaaatcaacatttttgttcttgaaaattgtatgaatcaaacaattc |
41558144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 41583998 - 41584258
Alignment:
| Q |
15 |
cagagacatacagacattggcattctaggcacataggaaatgggtttaggtcttt-gaaattgaataagcagattatagataaattgaagggtaggttga |
113 |
Q |
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| T |
41583998 |
cagagacatacaggcattggcattctaggcacatagtaaatgggtttaggtcttttgaaattgaataagcagattatagataaattgaagggtaggttga |
41584097 |
T |
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| Q |
114 |
gagatgatgcatataatagtgattttttgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttgggt |
213 |
Q |
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| T |
41584098 |
gaaatgatgcatataatagtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcatgttgggt |
41584197 |
T |
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| Q |
214 |
tccagcatagaccttcacaatatgttgggagtaaatcaacatttttgttcttgaaaattgt |
274 |
Q |
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| T |
41584198 |
tccagcatagaccttcacaacatgttgggagtaaattaacattttcgttcttgaaaattgt |
41584258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 41571581 - 41571840
Alignment:
| Q |
15 |
cagagacatacagacattggcattctaggcacataggaaatgggtttaggtctttgaaattgaataagcagattatagataaattgaagggtaggttgag |
114 |
Q |
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| T |
41571581 |
cagagacatataggcaatggcattttaggcacatgggaaatgggtttaagtctttgaaattggataagcagattatagataaattgaagtgtaagttgag |
41571680 |
T |
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| Q |
115 |
agatgatgcatataatagtgattttttgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttgggtt |
214 |
Q |
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| T |
41571681 |
agatgatgcatataatagtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggatt |
41571780 |
T |
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| Q |
215 |
ccagcatagaccttcacaatatgttgggagtaaatcaacatttttgttcttgaaaattgt |
274 |
Q |
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| T |
41571781 |
ccagcatagagcttcacaacatgttgggagtaaactaacatttttgttcttgaaaattgt |
41571840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 41590529 - 41590803
Alignment:
| Q |
15 |
cagagacatacagacattggcattctaggcacataggaaatgggtttaggtctttgaaattgaataagcagattatagataaattgaagggtaggttgag |
114 |
Q |
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| T |
41590529 |
cagagacatatatgcattggcattctaggcacatgggaaatgggtttaggtctttgaaattggataagcagattataaataaattgaagtgtaagttgag |
41590628 |
T |
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| Q |
115 |
agatgatgcatataatagtgattttttgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttgggtt |
214 |
Q |
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| T |
41590629 |
agatgatgcatataatagtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggatt |
41590728 |
T |
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| Q |
215 |
ccagcatagaccttcacaatatgttgggagtaaatcaacatttttgttcttgaaaattgtatgaatcaaacaattc |
290 |
Q |
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| T |
41590729 |
ccaacatagaccttcacaactaggtgggagtaaattaacatttctgtgcttg-taattgtatgaatcaaacaattc |
41590803 |
T |
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