View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12878_high_4 (Length: 407)
Name: NF12878_high_4
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 27 - 394
Target Start/End: Complemental strand, 10333338 - 10332970
Alignment:
| Q |
27 |
ttcagaatctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccag |
125 |
Q |
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| T |
10333338 |
ttcaggatctcagtagcatacttggtctgatgaagtatcaagccttttgaggttctgagaatctctattcctaagaaatatgcaagctttcctagaccaa |
10333239 |
T |
|
| Q |
126 |
ccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacatacaagcatacgataag |
225 |
Q |
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| T |
10333238 |
tcatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaatttatcttccagtcaacataaaatcatccacatacaagcatacgataag |
10333139 |
T |
|
| Q |
226 |
taaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgtcaannnnnnnattctag |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10333138 |
taaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgtcaatttttttattctag |
10333039 |
T |
|
| Q |
326 |
gccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttg |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10333038 |
gccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttg |
10332970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 33685066 - 33684886
Alignment:
| Q |
33 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
131 |
Q |
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|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33685066 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33684967 |
T |
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| Q |
132 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
212 |
Q |
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|||| || ||||| ||||||||||| || |||| ||| |||| | ||||||||||| | ||||| |||||| ||||||| |
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| T |
33684966 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33684886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 212
Target Start/End: Complemental strand, 33702120 - 33701940
Alignment:
| Q |
33 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
131 |
Q |
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|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33702120 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33702021 |
T |
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| Q |
132 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
212 |
Q |
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|||| || ||||| ||||||||||| || |||| ||| |||| | ||||||||||| | ||||| |||||| ||||||| |
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| T |
33702020 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33701940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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