View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12878_high_8 (Length: 361)

Name: NF12878_high_8
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12878_high_8
NF12878_high_8
[»] chr2 (5 HSPs)
chr2 (11-342)||(42117689-42118016)
chr2 (119-195)||(28715937-28716013)
chr2 (98-193)||(31592976-31593071)
chr2 (91-198)||(5198716-5198825)
chr2 (91-198)||(15603024-15603133)
[»] chr7 (4 HSPs)
chr7 (28-198)||(16183692-16183868)
chr7 (41-198)||(8140025-8140185)
chr7 (41-151)||(8138569-8138681)
chr7 (120-198)||(30235198-30235278)
[»] chr4 (7 HSPs)
chr4 (28-198)||(10427360-10427536)
chr4 (116-198)||(30950244-30950327)
chr4 (91-198)||(24520086-24520195)
chr4 (91-198)||(42266050-42266159)
chr4 (91-198)||(42270769-42270878)
chr4 (91-198)||(48701882-48701991)
chr4 (140-188)||(21515529-21515577)
[»] chr1 (3 HSPs)
chr1 (15-198)||(4130152-4130340)
chr1 (28-182)||(46191311-46191470)
chr1 (93-186)||(30697188-30697282)
[»] chr6 (4 HSPs)
chr6 (91-198)||(21966698-21966805)
chr6 (91-198)||(1234848-1234957)
chr6 (61-134)||(23012626-23012699)
chr6 (91-198)||(27878770-27878879)
[»] chr3 (3 HSPs)
chr3 (147-198)||(54546088-54546139)
chr3 (28-96)||(24671187-24671256)
chr3 (91-198)||(5823336-5823445)
[»] chr5 (5 HSPs)
chr5 (91-198)||(34360103-34360212)
chr5 (91-198)||(29585361-29585470)
chr5 (91-198)||(34352395-34352504)
chr5 (91-198)||(41718557-41718666)
chr5 (91-198)||(41723283-41723392)
[»] chr8 (2 HSPs)
chr8 (91-198)||(9439433-9439542)
chr8 (91-198)||(9444153-9444262)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 42117689 - 42118016
Alignment:
Q  11 gagtgagatgaaatatagtttctcctaggttagtattctcctatttccatagagagagtaaattgtcttttctcgtatttagagaggtcttataatttct 110  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  42117689 gagtgagatgaaatatagtttctcctaggttagtatactcctatttccatagagagagtaatttgtcttttctcatatttagagaggtcttataatttct 42117788  T
Q  111 ctcgtttagtgaaagttatctacttttatctcgtggttttcccccttatttattgagaggtttctacgtaaatattgtatgttcagttannnnnnnnctc 210  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||        |||    
T  42117789 ctcgtttaatgaaagttatctacttttgtctcgtggtttttccccttattaattgagaggtttctacgtaaatattgtatgttcagttattttttttctc 42117888  T
Q  211 agcttcatgataatatttatgttctagtacccaaccaaacacaccaaaaagatgaacatgcaactcaacattctagtttttggagtctgtacgtatgtga 310  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  42117889 agcttcatcataatatttatgctctagtacccaaccaaacacaccaaaaagatgaacatgcaactcaacattctagtttttggagtct----gtatgtga 42117984  T
Q  311 caaatttgcaaccttcaaataagccaaagagg 342  Q
    ||||||||||||||||||||||||||||||||    
T  42117985 caaatttgcaaccttcaaataagccaaagagg 42118016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 28715937 - 28716013
Alignment:
Q  119 gtgaaagttatctacttttatctcgtggttttcccccttatttattgagaggtttctacgtaaatattgtatgttca 195  Q
    ||||||||| |||| | || ||| |||||||| ||||||||||| |||| |||||| ||||||||||||| ||||||    
T  28715937 gtgaaagttctctattcttctcttgtggtttttccccttatttaatgaggggtttccacgtaaatattgtgtgttca 28716013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 31593071 - 31592976
Alignment:
Q  98 tcttataatttctctcgtttagtgaaagttatctacttttatctcgtggttttcccccttatttattgagaggtttctacgtaaa-tattgtatgtt 193  Q
    |||| |||||||| ||| |||||||||||| |||||| |||||| ||||||||    ||||||||||||||| |||| ||||||| |||||||||||    
T  31593071 tcttgtaatttctttcggttagtgaaagttctctactcttatct-gtggttttttttcttatttattgagagatttccacgtaaattattgtatgtt 31592976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 5198825 - 5198716
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  5198825 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 5198726  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  5198725 gtgttcagtt 5198716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 15603024 - 15603133
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||||| ||||||||     |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  15603024 agagaggtcttgtaatttcttctacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 15603123  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  15603124 gtgttcagtt 15603133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 16183868 - 16183692
Alignment:
Q  28 gtttctcctag-gttagtattctcctatttccatagagagagtaaattgtcttttctcgtatttag--agaggtcttataatt-tctctcgtttagtgaa 123  Q
    ||||||||||| ||||||||||||||||||| | |||||| |||| |||||| | || ||||||||  ||||||||| ||||| |||  |  ||||||||    
T  16183868 gtttctcctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaa 16183769  T
Q  124 agttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgtatgttcagtt 198  Q
    |||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| ||||||||| |||||||||    
T  16183768 agttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 16183692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 41 - 198
Target Start/End: Complemental strand, 8140185 - 8140025
Alignment:
Q  41 tagtattctcctatttccatagagagagtaaattgtcttttctcgtatt--tagagaggtcttataatttctctcgtttagtgaaagttatctactttta 138  Q
    ||||||||||||||||| | |||||| |||| |||||| | || |||||   ||||||||||||||||||||  |  | |||||||||| |||| | |||    
T  8140185 tagtattctcctatttcaagagagagggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta 8140086  T
Q  139 tctcgtggttttc-ccccttatttattgagaggtttctacgtaaatattgtatgttcagtt 198  Q
     | | |||||||| |||||||||| ||||| |||||| || ||||||||||  ||||||||    
T  8140085 ccccatggttttctccccttatttgttgaggggtttccacataaatattgtgcgttcagtt 8140025  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 8138681 - 8138569
Alignment:
Q  41 tagtattctcctatttccatagagagagtaaattgtcttttctcgtatttaga--gaggtcttataatttctctcgtttagtgaaagttatctactttta 138  Q
    ||||||||||||| ||| | ||||||||||| |||||| | || |||||||||  |||||||| ||||||||  | ||||||||||||| |||| | ||     
T  8138681 tagtattctcctacttcaagagagagagtaatttgtctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttg 8138582  T
Q  139 tctcgtggttttc 151  Q
     ||||||||||||    
T  8138581 cctcgtggttttc 8138569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 30235198 - 30235278
Alignment:
Q  120 tgaaagttatctacttttatctcgtggttttc--ccccttatttattgagaggtttctacgtaaatattgtatgttcagtt 198  Q
    |||||||| |||||| ||||| |||||||||   |||||||||  ||||| |||||| ||||||||||||| |||||||||    
T  30235198 tgaaagttttctactcttatcccgtggtttttttccccttattcgttgaggggtttccacgtaaatattgtgtgttcagtt 30235278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 198
Target Start/End: Original strand, 10427360 - 10427536
Alignment:
Q  28 gtttctcctag-gttagtattctcctatttccatagagagagtaaattgtcttttctcgtatttagagag--gtcttataatt-tctctcgtttagtgaa 123  Q
    ||||||||||| ||||||||||||||||||| | |||||| |||| |||||| | || ||||||||||||  ||||| ||||| |||  |  ||||||||    
T  10427360 gtttctcctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaa 10427459  T
Q  124 agttatctacttttatctcgt-ggttttcccccttatttattgagaggtttctacgt-aaatattgtatgttcagtt 198  Q
    ||||||||||||||  | ||| | |||| |||||||||| ||||| ||||||  ||| ||||||||| |||||||||    
T  10427460 agttatctactttttccccgtagttttttccccttatttgttgaggggtttccgcgtaaaatattgtgtgttcagtt 10427536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 30950327 - 30950244
Alignment:
Q  116 ttagtgaaagttatctacttttatctcgtggttttcccccttatttattgagaggtttctacgt-aaatattgtatgttcagtt 198  Q
    |||||||||||| |||||| ||  | |||||||||  ||||||||| ||||| |||||| |||| ||||||||| |||||||||    
T  30950327 ttagtgaaagttctctactcttgccccgtggttttttcccttatttgttgaggggtttccacgtaaaatattgtgtgttcagtt 30950244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 24520195 - 24520086
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  24520195 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 24520096  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  24520095 gtgttcagtt 24520086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 42266050 - 42266159
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  42266050 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 42266149  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  42266150 gtgttcagtt 42266159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 42270769 - 42270878
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  42270769 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 42270868  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  42270869 gtgttcagtt 42270878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 48701991 - 48701882
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  48701991 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 48701892  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  48701891 gtgttcagtt 48701882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 21515577 - 21515529
Alignment:
Q  140 ctcgtggttttcccccttatttattgagaggtttctacgtaaatattgt 188  Q
    |||||||||||  ||||||||||||||| | |||||| |||||||||||    
T  21515577 ctcgtggttttttcccttatttattgagggatttctatgtaaatattgt 21515529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 4130152 - 4130340
Alignment:
Q  15 gagatgaaatatagtttctcctag-gttagtattctcctatttccatagagagagtaaattgtcttttctcgtatttagagag--gtcttataatt-tct 110  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||| | |||||| |||| |||||| | || ||||||||||||  ||||| ||||| |||    
T  4130152 gagaggaaatatagtttctcctagtgttagtattgtcctatttcaagagagagggtaatttgtctctccttgtatttagagagaagtcttgtaattatct 4130251  T
Q  111 ctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgtaaatattgtatgttcagtt 198  Q
      |  |||||||||||| |||||| ||  | ||||| |||| ||| |||||| ||||| | |||| |||||||| |||| |||||||||    
T  4130252 tccacttagtgaaagttctctactcttgccccgtggttttttccctttatttgttgagggatttccacgtaaattttgtgtgttcagtt 4130340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 46191311 - 46191470
Alignment:
Q  28 gtttctcctag-gttagtattctcctatttccatagagagagtaaattgtcttttctcgtatttagagag--gtcttataatt-tctctcgtttagtgaa 123  Q
    ||||||||||| ||||||||||||||||||| | |||||| |||| |||||| | ||  |||||||||||  ||||| ||||| |||  |  ||||||||    
T  46191311 gtttctcctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaa 46191410  T
Q  124 agttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgtaaa 182  Q
    |||| |||||| || || ||||| |||| |||||||||| ||||| |||||| |||||||    
T  46191411 agttctctactcttgtcccgtggttttttccccttatttgttgaggggtttccacgtaaa 46191470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 30697282 - 30697188
Alignment:
Q  93 agaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgtaaatatt 186  Q
    ||||||||| ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||||||||||    
T  30697282 agaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttccccttatttgttgaggggtttccacgtaaatatt 30697188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 21966698 - 21966805
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtggttttcccccttatttattgagaggtttctacgtaaatattgtat 190  Q
    ||||||||||||||||||||  | ||||||||||||| |||||| ||  | | || |||| ||| |||||||||||| |||||| || |||||||| |||    
T  21966698 agagaggtcttataatttcttccatttagtgaaagttctctactcttgccccatgatttttccctttatttattgaggggtttccacataaatattttat 21966797  T
Q  191 gttcagtt 198  Q
    ||| ||||    
T  21966798 gtttagtt 21966805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 1234848 - 1234957
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  1234848 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 1234947  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  1234948 gtgttcagtt 1234957  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 23012699 - 23012626
Alignment:
Q  61 agagagagtaaattgtcttttctcgtatttagagaggtcttataatttctctcgtttagtgaaagttatctact 134  Q
    ||||||||||| |||||| |  | ||||||| |||||||||  ||||||||||  |||||||||||| ||||||    
T  23012699 agagagagtaatttgtctctcattgtatttaaagaggtcttgaaatttctctcacttagtgaaagttctctact 23012626  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 27878879 - 27878770
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  27878879 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 27878780  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  27878779 gtgttcagtt 27878770  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 54546088 - 54546139
Alignment:
Q  147 ttttcccccttatttattgagaggtttctacgtaaatattgtatgttcagtt 198  Q
    |||| |||||||||| ||||| |||||| |||||||||||||||||||||||    
T  54546088 tttttccccttatttgttgaggggtttccacgtaaatattgtatgttcagtt 54546139  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 24671256 - 24671187
Alignment:
Q  28 gtttctcctag-gttagtattctcctatttccatagagagagtaaattgtcttttctcgtatttagagag 96  Q
    ||||||||||| ||||||||||||||||||| | |||||| |||| |||||| | || ||||||||||||    
T  24671256 gtttctcctagtgttagtattctcctatttcaagagagagggtaatttgtctctccttgtatttagagag 24671187  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 5823445 - 5823336
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  5823445 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 5823346  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  5823345 gtgttcagtt 5823336  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 34360103 - 34360212
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtggttttc-ccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | |||||||||  |||||||||| ||||| ||||||||||| |||||||||    
T  34360103 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttctacgtaaaatattgt 34360202  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  34360203 gtgttcagtt 34360212  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 29585470 - 29585361
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  29585470 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 29585371  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  29585370 gtgttcagtt 29585361  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 34352395 - 34352504
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  34352395 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 34352494  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  34352495 gtgttcagtt 34352504  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 41718557 - 41718666
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  41718557 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 41718656  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  41718657 gtgttcagtt 41718666  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Original strand, 41723283 - 41723392
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  41723283 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 41723382  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  41723383 gtgttcagtt 41723392  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 9439542 - 9439433
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  9439542 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 9439443  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  9439442 gtgttcagtt 9439433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 9444262 - 9444153
Alignment:
Q  91 agagaggtcttataatttctctcgtttagtgaaagttatctacttttatctcgtgg-ttttcccccttatttattgagaggtttctacgt-aaatattgt 188  Q
    ||||||||| | ||||||||  |  |||||||||||| |||||| ||  | ||||| |||| |||||||||| ||||| |||||| |||| |||||||||    
T  9444262 agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggttttttccccttatttgttgaggggtttccacgtaaaatattgt 9444163  T
Q  189 atgttcagtt 198  Q
     |||||||||    
T  9444162 gtgttcagtt 9444153  T

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