View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12878_low_14 (Length: 316)
Name: NF12878_low_14
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_low_14 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 151194 - 151496
Alignment:
| Q |
1 |
ttgaaggtagggcatatagtgaagataatgaaggatgaattcttccctgcagaccttattcttgtttcatccagttatgaggatgctatttgttatgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
151194 |
ttgaaggtagggcatatagtgaagataatgaaggatgaattcttccctgcagaccttattcttgtttcatccagttatgaggatgctatttgttatgttg |
151293 |
T |
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| Q |
101 |
aaacaatgaacttggatggggagacaaatttgaagttaaaacaaggattggaagtaacttgttatttgcaccaagactttgagttcggtgattttagagc |
200 |
Q |
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| T |
151294 |
aaacaatgaacttggatggggagacaaatttgaagttaaaacaaggattggaagtaacttgttatttgcaccaagactttgagttcggtgattttagagc |
151393 |
T |
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| Q |
201 |
ttcaatcaaatgtgaagatccaaatgcaaatttgtattcatttgttgggagtatggagtttaaagatcaacaatatgccctatctgctcagcaacttctt |
300 |
Q |
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| T |
151394 |
ttcaatcaaatgtgaagatccaaatgcaaatttgtattcatttgttgggagtatggagtttaaagatcaacaatatgccctatctgctcagcaacttctt |
151493 |
T |
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| Q |
301 |
ctc |
303 |
Q |
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| T |
151494 |
ctc |
151496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 160
Target Start/End: Original strand, 13706454 - 13706610
Alignment:
| Q |
4 |
aaggtagggcatatagtgaagataatgaaggatgaattcttccctgcagaccttattcttgtttcatccagttatgaggatgctatttgttatgttgaaa |
103 |
Q |
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| T |
13706454 |
aaggtaggaaatatagtgaagataaagaaggatgaattcttccctgccgacctattactgatttcgtccagttacgaagatgcagtctgctacgttgaaa |
13706553 |
T |
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| Q |
104 |
caatgaacttggatggggagacaaatttgaagttaaaacaaggattggaagtaactt |
160 |
Q |
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| T |
13706554 |
ccatgaacttggatggtgagacaaatttgaagctaaaacaaggtttggaagtaactt |
13706610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 13706656 - 13706753
Alignment:
| Q |
206 |
tcaaatgtgaagatccaaatgcaaatttgtattcatttgttgggagtatggagtttaaagatcaacaatatgccctatctgctcagcaacttcttctc |
303 |
Q |
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| T |
13706656 |
tcaaatgtgaagatccaaatgcaaatttgtactcttttgtcgggacattggattttgaagggcaaaaatatccactttctcctcagcagcttcttctc |
13706753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 29591355 - 29591259
Alignment:
| Q |
206 |
tcaaatgtgaagatccaaatgcaaatttgtattcatttgttgggagtatggagtttaaagatcaacaatatgccctatctgctcagcaacttcttct |
302 |
Q |
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|||||||||||||||||||||||||| |||| || ||||||||||| |||||||| ||| |||| | |||||||| || | |||||||||||||| |
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| T |
29591355 |
tcaaatgtgaagatccaaatgcaaatctgtactcgtttgttgggagcttggagtttgaaggtcaaaactatgccctttccccacagcaacttcttct |
29591259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 29591496 - 29591403
Alignment:
| Q |
65 |
tttcatccagttatgaggatgctatttgttatgttgaaacaatgaacttggatggggagacaaatttgaagttaaaacaaggattggaagtaac |
158 |
Q |
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||||||| |||||||| ||||| |||| |||||||| || |||||||| || || ||||||||||||||| |||||||||| || || ||||| |
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| T |
29591496 |
tttcatcgagttatgaagatgcagtttgctatgttgagaccatgaacttagacggcgagacaaatttgaagctaaaacaaggtttagaggtaac |
29591403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 7913982 - 7913944
Alignment:
| Q |
13 |
catatagtgaagataatgaaggatgaattcttccctgca |
51 |
Q |
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|||||||||||||||||||| ||||||||||||| |||| |
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| T |
7913982 |
catatagtgaagataatgaaagatgaattcttccatgca |
7913944 |
T |
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