View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12878_low_16 (Length: 303)

Name: NF12878_low_16
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12878_low_16
NF12878_low_16
[»] chr8 (1 HSPs)
chr8 (1-292)||(10069527-10069815)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 10069815 - 10069527
Alignment:
Q  1 atatataccaactgatgctttctaaatttatataataacatcaaaagtaaataaatggagagagcattttattttgcatgtaaatgagcaaacaacgatt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10069815 atatataccaattgatgctttctaaatttatataataacatcaaaagtaaataaatggagagagcattttattttgcatgtaaatgagcaaacaatgatt 10069716  T
Q  101 tatttgtcgtgtannnnnnnactcactgacataagactatcatcacactgtctacgtcatttatgctctttccctttctcttcttcttct---aatactc 197  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   |||||||    
T  10069715 tatttgtcgtgtacc------ctcactgacataagactatcatcacactgtctacgtcatttacgctctttccctttctcttcttcttcttctaatactc 10069622  T
Q  198 acatcaacaagtaaccatagaaactctttcttaacaatgttgcatgcaacatattctttacttttatgagttttaaactcttcgtctctctgctt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10069621 acatcaacaagtaaccatagaaactctttcttaacaatgttgcatgcaacatattctttacttttatgagttttaaactcttcgtctctctgctt 10069527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University