View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12878_low_2 (Length: 543)

Name: NF12878_low_2
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12878_low_2
NF12878_low_2
[»] chr3 (17 HSPs)
chr3 (166-445)||(8431406-8431686)
chr3 (19-124)||(48531600-48531706)
chr3 (166-309)||(43073034-43073178)
chr3 (166-312)||(31525360-31525507)
chr3 (166-303)||(28934724-28934861)
chr3 (172-309)||(10454279-10454422)
chr3 (182-318)||(44656229-44656369)
chr3 (190-309)||(47820897-47821022)
chr3 (172-309)||(9358743-9358883)
chr3 (166-303)||(52076066-52076209)
chr3 (22-81)||(48528882-48528941)
chr3 (186-309)||(53349401-53349527)
chr3 (166-303)||(20701152-20701292)
chr3 (179-303)||(28956952-28957079)
chr3 (172-303)||(42881885-42882019)
chr3 (190-309)||(46750212-46750333)
chr3 (250-309)||(55166895-55166955)
[»] chr1 (14 HSPs)
chr1 (182-387)||(31833817-31834019)
chr1 (167-312)||(12172951-12173097)
chr1 (166-397)||(19472716-19472944)
chr1 (191-309)||(46757306-46757425)
chr1 (172-309)||(26990601-26990739)
chr1 (166-303)||(8462958-8463097)
chr1 (190-309)||(42442019-42442142)
chr1 (172-309)||(47028931-47029072)
chr1 (166-309)||(38548673-38548821)
chr1 (184-303)||(41955891-41956016)
chr1 (219-309)||(43268645-43268739)
chr1 (172-309)||(26384960-26385100)
chr1 (166-303)||(28447722-28447863)
chr1 (167-308)||(43460698-43460848)
[»] chr7 (14 HSPs)
chr7 (172-309)||(46691839-46691981)
chr7 (166-303)||(30655586-30655727)
chr7 (166-303)||(22197675-22197816)
chr7 (166-303)||(22240005-22240146)
chr7 (183-303)||(36615808-36615927)
chr7 (167-312)||(31424761-31424912)
chr7 (166-303)||(1039051-1039191)
chr7 (190-303)||(49035865-49035983)
chr7 (184-306)||(41702867-41702992)
chr7 (194-303)||(33320710-33320817)
chr7 (343-397)||(30655761-30655815)
chr7 (172-312)||(32678937-32679083)
chr7 (166-243)||(42598053-42598130)
chr7 (172-309)||(43397640-43397781)
[»] chr2 (6 HSPs)
chr2 (179-315)||(38908663-38908800)
chr2 (182-309)||(41419617-41419748)
chr2 (172-309)||(14732334-14732473)
chr2 (191-309)||(41378216-41378332)
chr2 (166-303)||(22649053-22649193)
chr2 (190-243)||(43356750-43356803)
[»] chr8 (14 HSPs)
chr8 (166-309)||(40930818-40930961)
chr8 (166-302)||(13959207-13959347)
chr8 (170-309)||(24200614-24200753)
chr8 (172-309)||(25829259-25829399)
chr8 (165-309)||(5200469-5200615)
chr8 (173-309)||(22839250-22839391)
chr8 (166-309)||(38086402-38086551)
chr8 (236-303)||(10124866-10124935)
chr8 (166-309)||(30836116-30836272)
chr8 (166-215)||(7845135-7845184)
chr8 (167-243)||(44362918-44362994)
chr8 (79-140)||(38542725-38542786)
chr8 (166-230)||(584123-584187)
chr8 (250-309)||(7845080-7845138)
[»] chr4 (11 HSPs)
chr4 (182-303)||(16572074-16572198)
chr4 (167-301)||(47571560-47571694)
chr4 (166-309)||(32183275-32183425)
chr4 (172-268)||(15186975-15187072)
chr4 (79-166)||(5341706-5341793)
chr4 (172-306)||(55133102-55133233)
chr4 (172-309)||(25641263-25641407)
chr4 (172-310)||(16662301-16662441)
chr4 (172-308)||(42390766-42390906)
chr4 (106-166)||(25222218-25222278)
chr4 (166-216)||(45511390-45511440)
[»] chr5 (10 HSPs)
chr5 (190-309)||(23172985-23173107)
chr5 (184-309)||(22887211-22887337)
chr5 (166-309)||(9931785-9931935)
chr5 (184-318)||(25539810-25539947)
chr5 (166-303)||(10431063-10431204)
chr5 (183-303)||(819134-819254)
chr5 (167-309)||(3677779-3677924)
chr5 (166-294)||(42241577-42241708)
chr5 (251-303)||(2292168-2292222)
chr5 (166-224)||(9597742-9597800)
[»] chr6 (8 HSPs)
chr6 (166-303)||(33112703-33112844)
chr6 (172-309)||(10246910-10247049)
chr6 (165-397)||(11546685-11546912)
chr6 (175-310)||(6575720-6575860)
chr6 (167-309)||(15859093-15859244)
chr6 (166-397)||(34761080-34761306)
chr6 (250-309)||(33984753-33984814)
chr6 (181-224)||(12754422-12754465)
[»] scaffold0209 (1 HSPs)
scaffold0209 (166-230)||(12883-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (168-224)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 166 - 445
Target Start/End: Original strand, 8431406 - 8431686
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 265  Q
    ||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8431406 tttttttttttgaaacggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 8431505  T
Q  266 gccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggac-acaaaaataatgacgcagacatatacaaa 364  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| |||||||||||||||||||||    
T  8431506 gcaacaaaacaccggctcgaacaaaaaccccttaaaaaccaccccaacactaaggcactaactaccggtcaaaaaaaaaaatgacgcagacatatacaaa 8431605  T
Q  365 tgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactgcagcaccacaccaaaaagacagcagcaacc 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8431606 tgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactacagcaccacaccaaaaagacagcagcaacc 8431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 48531706 - 48531600
Alignment:
Q  19 aacctgttcacctatcacgtcttgtttgcaagagcgtt-gtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtgg 117  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48531706 aacctgttcacctatcacgtcttgtttgcaagagcatttgtatttatgagatatgagaagctaagagaaaacaaccttgaatgagattgagaggaagtgg 48531607  T
Q  118 tgttggt 124  Q
    |||||||    
T  48531606 tgttggt 48531600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 43073034 - 43073178
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggt 264  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || ||||||||| | || ||||||||||||||||    
T  43073034 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaaaagaatacaaggggaaatcggt 43073133  T
Q  265 tgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    ||||  |||||||||||||||||||||||||||||||||||||||    
T  43073134 tgccttaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 166 - 312
Target Start/End: Complemental strand, 31525507 - 31525360
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 265  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| ||||||| ||||| || ||||||||| | | |||||||||||||||||    
T  31525507 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggtt 31525408  T
Q  266 gccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 312  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  31525407 gccacacaaacaacggctcgaacaaaaaccccttaaaaaccaccctaa 31525360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 166 - 303
Target Start/End: Original strand, 28934724 - 28934861
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggt 264  Q
    ||||| ||||||||   |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| |||||  || ||||||||||||||||    
T  28934724 tttttttttttgaattagcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaacaaaacaaggggaaatcggt 28934823  T
Q  265 tgccacaaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  28934824 tgccac-aaacaccggctcgaacaaaaaccccttaaaaa 28934861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 10454422 - 10454279
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-----aaaaaataaacacaaggggaaatcggttg 266  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||  ||||||| |||||||| |||     |||||||| | ||||||||||||||||||    
T  10454422 tttttgaaatggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgggaaaaaaaaaatacatacaaggggaaatcggttg 10454323  T
Q  267 ccacaa-aacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    |||||| ||  ||||||| |||||||||||||||||||||||||    
T  10454322 ccacaagaaagccggctcaaacaaaaaccccttaaaaaccaccc 10454279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 182 - 318
Target Start/End: Original strand, 44656229 - 44656369
Alignment:
Q  182 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac---acaaggggaaatcggttgccacaaaacac 277  Q
    ||||||| |||||||||||| ||||||||||||||||||| || |||||||| |||| ||||| ||||   ||||||| ||||||||||||| | |||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggagaaaaaaaaaccatacaagggaaaatcggttgccatataacac 44656328  T
Q  278 cggctcgaacaaaaaccccttaaaaaccaccctaacactaa 318  Q
     | |||||||||||| ||||||||||||||||||| |||||    
T  44656329 agactcgaacaaaaatcccttaaaaaccaccctaaaactaa 44656369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 47821022 - 47820897
Alignment:
Q  190 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcg 284  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||    |||||||| | | |||||||||||||||||| || |||||||||||||    
T  47821022 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccggctcg 47820923  T
Q  285 aacaaaaacccc-ttaaaaaccaccc 309  Q
    |||||||||||| |||||||||||||    
T  47820922 aacaaaaacccctttaaaaaccaccc 47820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 9358743 - 9358883
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcggttgccac 270  Q
    |||||||| |||||||| ||||||| |||| |||||||||| ||| | ||||| ||||| || |||| |||| || | | |||||||||||||||||| |    
T  9358743 tttttgaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgc 9358842  T
Q  271 a-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 309  Q
    | ||||||||||||||||||||||||| |||||||||||||    
T  9358843 acaaacaccggctcgaacaaaaacccctttaaaaaccaccc 9358883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 52076209 - 52076066
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga------aaaaataaacacaaggggaaa 259  Q
    ||||| |||||||| |||||||| |||| ||||||| |||||||||| ||| ||||||| |||||||| ||||      ||||||| | |||||||| ||    
T  52076209 tttttttttttgaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggagaaaaaaaaaatacaaacaaggggtaa 52076110  T
Q  260 tcggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    |||||||||| ||||||   ||||||||||||||||||||||||    
T  52076109 tcggttgccataaaacaaacgctcgaacaaaaaccccttaaaaa 52076066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 48528941 - 48528882
Alignment:
Q  22 ctgttcacctatcacgtcttgtttgcaagagcgttgtatttatgagatatgagaagctaa 81  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48528941 ctgttcacctatcacgtcttgtttgcaagagcattgtatttatgagatatgagaagctaa 48528882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 53349527 - 53349401
Alignment:
Q  186 aaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccggct 282  Q
    |||||||||||||||| |||| | ||||||| ||||||| || || || ||| |||| ||||||  |||||| |||||||||||| || |||||||||||    
T  53349527 aaaaattattaaccaacaagctcatgcaagaagcactaataaacttgggtgggaaaattaaacatacaagggaaaatcggttgccgcacaaacaccggct 53349428  T
Q  283 cgaacaaaaaccccttaaaaaccaccc 309  Q
    | |||||||||||||||||||||||||    
T  53349427 caaacaaaaaccccttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 20701292 - 20701152
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcg 262  Q
    ||||| ||||| || | |||||| ||||||||||||  ||||||| ||||| ||||||| |||||||| || |   ||||||| | ||||||||||||||    
T  20701292 tttttttttttaaatcagcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcg 20701193  T
Q  263 gttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
     |||||||| |||  ||||||||||||||||||||||||||    
T  20701192 attgccacacaactacggctcgaacaaaaaccccttaaaaa 20701152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 28957079 - 28956952
Alignment:
Q  179 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaac 275  Q
    |||| ||||| |||||||||||| ||| ||||||||||  |||| | |||||||| ||  ||||| ||||| |  |||||||||||||||||||| ||||    
T  28957079 aacgacaaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaac 28956980  T
Q  276 accggctcgaacaaaaaccccttaaaaa 303  Q
    ||||||||||||||||||||||| ||||    
T  28956979 accggctcgaacaaaaacccctttaaaa 28956952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 172 - 303
Target Start/End: Complemental strand, 42882019 - 42881885
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca----caaggggaaatcggttgc 267  Q
    ||||| || |||||||| ||||||| |||| |||| ||| ||||||||||||| ||||||||  |||||||| | |||    ||||||||||||| ||||    
T  42882019 tttttaaatcggcaaaatattatta-ccaacaagctcgtacaagatgcactaaaaagctcgggaggaaaaaaaacacaaatacaaggggaaatcgattgc 42881921  T
Q  268 cacaaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    ||||| |||||||||| ||||||||| |||||||||    
T  42881920 cacaatacaccggctcaaacaaaaacgccttaaaaa 42881885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 46750333 - 46750212
Alignment:
Q  190 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatg---gaaaaaataaacacaaggggaaatcggttgccacaaaacaccggctcgaa 286  Q
    |||||||||||| ||  | || ||||||||||||| |||||||| ||   ||||||  ||| |||| || |||||||||||| ||||||||||| |||||    
T  46750333 attattaaccaacaaatctgtacaagatgcactaataagctcgggtgaaagaaaaagaaaatacaaaggaaaatcggttgccgcaaaacaccggttcgaa 46750234  T
Q  287 caaaaaccccttaaaaaccaccc 309  Q
    |||||| ||||||||||||||||    
T  46750233 caaaaa-cccttaaaaaccaccc 46750212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 309
Target Start/End: Original strand, 55166895 - 55166955
Alignment:
Q  250 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    ||||||||||||||||||| || ||||   |||||||||||||||||||||||||||||||    
T  55166895 caaggggaaatcggttgccgcacaaactttggctcgaacaaaaaccccttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 3e-68; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 182 - 387
Target Start/End: Complemental strand, 31834019 - 31833817
Alignment:
Q  182 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggc 281  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||||||||| || ||||||   | ||||||| ||||||||||||||| |||||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtgaaaaaaa---atacaagggaaaatcggttgccacataacaccggc 31833923  T
Q  282 tcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatacaaatgacaatccgcaagcat 381  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  31833922 tcgaacaaaaaccccttaaaaaccaccccaacactaaggcacaaactaccagtcacaaaagtaatgacgcagacatatacaaatggcaatccgcaagcat 31833823  T
Q  382 acccct 387  Q
    ||||||    
T  31833822 acccct 31833817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 167 - 312
Target Start/End: Complemental strand, 12173097 - 12172951
Alignment:
Q  167 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttg 266  Q
    |||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | ||||||||||||||||||    
T  12173097 ttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttg 12172998  T
Q  267 ccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 312  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||    
T  12172997 ccacacaaacatcagctcgaacaaaaaccccttaaaaaccaccctaa 12172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 166 - 397
Target Start/End: Complemental strand, 19472944 - 19472716
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcgg 263  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||  ||||||||| | | ||||||||||| |    
T  19472944 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcag 19472845  T
Q  264 ttgccaca-aaacaccggctcgaacaaaaa-ccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatac 361  Q
    |||||| | |||| |||||||||||||||| ||| |||||||||||||  | ||||||| ||  ||       ||||| | ||||||||||| |||||||    
T  19472844 ttgccatacaaactccggctcgaacaaaaatccctttaaaaaccacccataaactaaggaacacac-------cacaagagtaatgacgcaggcatatac 19472752  T
Q  362 aaatgacaatccgcaagcatacccctgcatcaacac 397  Q
    || |||||  || |||||||||||||||||||||||    
T  19472751 aagtgacagaccacaagcatacccctgcatcaacac 19472716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 46757425 - 46757306
Alignment:
Q  191 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaa-aacaccggctcgaacaa 289  Q
    ||||||||||| |||||||||||||||||||||| |||||| | |||||||||  || | |||||||||||| ||||||||| |||||| ||||||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtggaaaaaaacaatataaggggaaatcgattgccacaataacaccagctcgaacaa 46757326  T
Q  290 aaaccccttaaaaaccaccc 309  Q
    |||||| |||||||||||||    
T  46757325 aaaccctttaaaaaccaccc 46757306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 26990739 - 26990601
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 271  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | ||||||| |||||| ||||| ||    
T  26990739 tttttgaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaagggaaaatcgattgccgca 26990640  T
Q  272 -aaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
     || ||||||||| |||||||| ||||||||||||||||    
T  26990639 caagcaccggctcaaacaaaaatcccttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 166 - 303
Target Start/End: Original strand, 8462958 - 8463097
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcgg 263  Q
    ||||| ||||||||| || |||| |||||||||||| |||| ||||||||| |||||||  ||||||| ||  ||||||||| | ||||||| |||||||    
T  8462958 tttttttttttgaaatgg-aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcgg 8463056  T
Q  264 ttgccac-aaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    ||||||| |||||  ||||||||||||||||||||||||||    
T  8463057 ttgccacaaaaacgtcggctcgaacaaaaaccccttaaaaa 8463097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 42442019 - 42442142
Alignment:
Q  190 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgccac-aaaacaccggctcga 285  Q
    |||||||||||| ||| |||||||||| ||||||| |||||||| || |||||| ||   | |||| ||||||||||||||||  ||||||||| |||||    
T  42442019 attattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgactcga 42442118  T
Q  286 acaaaaaccccttaaaaaccaccc 309  Q
    ||||||||||||||||||||||||    
T  42442119 acaaaaaccccttaaaaaccaccc 42442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 47029072 - 47028931
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-----taaacacaaggggaaatcggttg 266  Q
    ||||||||||||| ||| ||||  |||||| |||  ||||||||| ||| ||| |||||||| |||||||||     |||| ||||||||||||||||||    
T  47029072 tttttgaaacggccaaatatta--aaccaacaagttcgtgcaagacgcattaataagctcgggtggaaaaaaaaacataaatacaaggggaaatcggttg 47028975  T
Q  267 ccacaaaa-caccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    || ||||| |||||||||||||||||||||||||||||| ||||    
T  47028974 ccgcaaaaacaccggctcgaacaaaaaccccttaaaaactaccc 47028931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 38548821 - 38548673
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaaca--caaggggaaatc 261  Q
    ||||| |||||||| |||||||| |||||||||||| || ||||||||||| ||||||| |||||||| |||  |||||| |||||  ||||||||||||    
T  38548821 tttttttttttgaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgggaaaaaaaaaaacaagcaaggggaaatc 38548722  T
Q  262 ggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    |||||||| | |||    ||||||||||||  |||||||||||||||||    
T  38548721 ggttgccatacaaaatttggctcgaacaaaccccccttaaaaaccaccc 38548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 41955891 - 41956016
Alignment:
Q  184 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-----acacaaggggaaatcggttgccacaa-aacac 277  Q
    ||||| |||||||||||| ||   |||||||||| |||||| ||||| ||||||| |||| ||     | ||||||||||||||||||||| || |||||    
T  41955891 caaaatattattaaccaacaaattcgtgcaagatacactaataagcttggatggagaaaaaaactaaaatacaaggggaaatcggttgccataataacac 41955990  T
Q  278 cggctcgaacaaaaaccccttaaaaa 303  Q
    ||||||||||||||| ||||||||||    
T  41955991 cggctcgaacaaaaatcccttaaaaa 41956016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 219 - 309
Target Start/End: Original strand, 43268645 - 43268739
Alignment:
Q  219 cactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 309  Q
    |||||| |||||||| |||| |||| ||||| |  ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  43268645 cactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 26385100 - 26384960
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgcc 268  Q
    |||||||||| | |||| |||||||||| | |||||||| ||||| || |||| ||||| || ||||||||| ||   | |||| ||||||||||||| |    
T  26385100 tttttgaaacagtaaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtggaaaaaaaaatacaaacaaagggaaatcggttgtc 26385002  T
Q  269 aca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    | | ||||||| |||| ||||||| |||||||||||||||||    
T  26385001 atacaaacaccagctcaaacaaaacccccttaaaaaccaccc 26384960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 28447863 - 28447722
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcg 262  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||  |||  || |||||| ||   | ||||||| ||||||    
T  28447863 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataaattcgagtgaaaaaaaaaagacaaacaagggaaaatcg 28447764  T
Q  263 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    ||||| | | ||||| | || |||||||||||| ||||||||    
T  28447763 gttgcaatataaacatcagcacgaacaaaaacctcttaaaaa 28447722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 308
Target Start/End: Complemental strand, 43460848 - 43460698
Alignment:
Q  167 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg----gaaaaaataaac--acaaggggaaat 260  Q
    |||| |||||||| || ||||| |||||||||||| ||| | |||| ||| ||||||| |||||  | ||    ||||||| ||||  | ||||||||||    
T  43460848 ttttttttttgaatcgacaaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtgaaaagaaaaaaaaaactaagaaggggaaat 43460749  T
Q  261 cggttgcca--caaaacaccggctcgaacaaaaacccctt-aaaaaccacc 308  Q
    ||||||| |  |||||||| | |||||||||||||||||| ||||||||||    
T  43460748 cggttgcgatacaaaacactgactcgaacaaaaaccccttcaaaaaccacc 43460698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 46691839 - 46691981
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 267  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||    |||||||| | |||||||||||||||||||    
T  46691839 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgc 46691938  T
Q  268 caca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  46691939 cacataaacaccggctcgaacaaaaaccccttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 166 - 303
Target Start/End: Original strand, 30655586 - 30655727
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcgg 263  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||||||||||||    
T  30655586 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcgg 30655685  T
Q  264 ttgc--cacaaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    ||||  ||||||| | || |||||||||||||| ||||||||    
T  30655686 ttgccacacaaaatatcgactcgaacaaaaacctcttaaaaa 30655727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 22197816 - 22197675
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaat 260  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     |||||||||||    
T  22197816 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaat 22197718  T
Q  261 cggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    || || ||||||||||||| |||||||||||||||||||||||    
T  22197717 cgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22197675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 166 - 303
Target Start/End: Original strand, 22240005 - 22240146
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaat 260  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     |||||||||||    
T  22240005 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaat 22240103  T
Q  261 cggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    || || ||||||||||||| |||||||||||||||||||||||    
T  22240104 cgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22240146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 183 - 303
Target Start/End: Original strand, 36615808 - 36615927
Alignment:
Q  183 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggct 282  Q
    |||||| ||||||| |||| |||||||||||||| ||||||| |||||||| |||||||||  || |||||||||||||||||||||| |||| || |||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaacaaaacaaggggaaatcggttgccac-aaactccagct 36615906  T
Q  283 cgaacaaaaaccccttaaaaa 303  Q
    ||||||||||||| |||||||    
T  36615907 cgaacaaaaaccctttaaaaa 36615927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 167 - 312
Target Start/End: Original strand, 31424761 - 31424912
Alignment:
Q  167 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcggt 264  Q
    |||| |||||||| |||||||| |||||||||||| || |||||||||||  |||||| ||||| || |||| |||| ||||  | ||||||||||||||    
T  31424761 ttttttttttgaagcggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggt 31424860  T
Q  265 tgcca--caaaacaccggctcgaacaaaaacccctt--aaaaaccaccctaa 312  Q
    |||||  | |||||||||||||| ||||||||||||  ||||||||||||||    
T  31424861 tgccattcgaaacaccggctcgatcaaaaacccctttaaaaaaccaccctaa 31424912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 166 - 303
Target Start/End: Original strand, 1039051 - 1039191
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcgg 263  Q
    ||||| ||||| ||||||||||| |||||||||| | |||||||||||||| ||||||| |||||||| |||| |||| ||||  ||||||| |||||||    
T  1039051 tttttttttttcaaacggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtggataaaaaaaacaaacaagggaaaatcgg 1039150  T
Q  264 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    |||| | | ||||   |||||||||||||||||||||||||    
T  1039151 ttgcaatacaaactttggctcgaacaaaaaccccttaaaaa 1039191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 190 - 303
Target Start/End: Original strand, 49035865 - 49035983
Alignment:
Q  190 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa----acacaaggggaaatcggttgccaca-aaacaccggctcg 284  Q
    |||||||||||| ||| |||| ||||| ||||||| |||||||| |||| |||| ||    | ||||||||||||||||||||||| ||||||||| |||    
T  49035865 attattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggttcg 49035964  T
Q  285 aacaaaaaccccttaaaaa 303  Q
    |||||||||||||||||||    
T  49035965 aacaaaaaccccttaaaaa 49035983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 41702992 - 41702867
Alignment:
Q  184 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccgg 280  Q
    ||||| ||||| ||||||  ||||||||||||  ||||||| ||| | || |||| |||| |||||  ||||||||| ||||||||| || |||||||||    
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccgg 41702893  T
Q  281 ctcgaacaaaaaccccttaaaaacca 306  Q
    ||||||||||||||||||||||||||    
T  41702892 ctcgaacaaaaaccccttaaaaacca 41702867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 194 - 303
Target Start/End: Complemental strand, 33320817 - 33320710
Alignment:
Q  194 ttaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaaaaa 292  Q
    |||||||| |||||||||||||| ||||||| |||||||| ||| |||   ||| |||||||||||| |||||||  | ||||||||||||||||||||     
T  33320817 ttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaa---aaaaacaaggggaaattggttgccttacaaacaccggctcgaacaaaac 33320721  T
Q  293 ccccttaaaaa 303  Q
    |||||||||||    
T  33320720 ccccttaaaaa 33320710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 397
Target Start/End: Original strand, 30655761 - 30655815
Alignment:
Q  343 taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 397  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||    
T  30655761 taatgacgccggcatatacaaatgacaatccacaagcatacccctgcgtcaacac 30655815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 32679083 - 32678937
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-----gaaaaaataaacacaaggggaaatcggttg 266  Q
    ||||| ||||||| |||  ||||||||||| |||||||||||||| ||||||| |||||||  ||      |||||| ||| ||||||  |||||| |||    
T  32679083 ttttttaaacggctaaattttattaaccaacaagcccgtgcaagacgcactaataagctcgagtgaaaaaaaaaaaaaaaatacaaggaaaaatcgattg 32678984  T
Q  267 ccac-aaaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 312  Q
    || | |||| || |||| |||||||||||||||||||||||| ||||    
T  32678983 ccgctaaaatactggctggaacaaaaaccccttaaaaaccactctaa 32678937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 42598130 - 42598053
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 243  Q
    ||||| ||||| ||||||||||| |||||||||||| || ||||||||||| ||||||| ||||| || |||| ||||    
T  42598130 tttttttttttaaaacggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggagaaaa 42598053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 43397781 - 43397640
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca------caaggggaaatcggtt 265  Q
    |||||||| ||||||| | ||||||||||| || ||||||||||| ||||||| ||||| || || |||||| ||| |      ||| || ||||| |||    
T  43397781 tttttgaatcggcaaata-ttattaaccaataaacccgtgcaagaagcactaa-aagcttgggtgaaaaaaaaaaaaaaacatacaaaggaaaatctgtt 43397684  T
Q  266 gccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    ||||||||||| | |||||||||||||||| | |||||||||||    
T  43397683 gccacaaaacaactgctcgaacaaaaacccttaaaaaaccaccc 43397640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 38908800 - 38908663
Alignment:
Q  179 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-taaacacaaggggaaatcggttgccacaaaacac 277  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||| |||||||| || |||||| |||| ||||||| |||||||| ||||||||||||    
T  38908800 aacggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtgaaaaaaaataaatacaagggaaaatcggtagccacaaaacac 38908701  T
Q  278 cggctcgaacaaaaaccccttaaaaaccaccctaacac 315  Q
    ||| |||||||||||||||||||||||||||| |||||    
T  38908700 cggttcgaacaaaaaccccttaaaaaccaccccaacac 38908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 41419748 - 41419617
Alignment:
Q  182 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgccacaa-aacac 277  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||   |||||| ||| ||||||||||||||||||||| || |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  278 cggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    || |||||||||||||||||||||||||||||    
T  41419648 cgactcgaacaaaaaccccttaaaaaccaccc 41419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 14732334 - 14732473
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat-ggaaaaaataaacacaaggggaaatcggttgccac 270  Q
    ||||||||| ||||||| |||||||||||| |||||||||| || |||||||| |||||||| | ||||||||  || ||||||||||||||||| || |    
T  14732334 tttttgaaaaggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgggaaaaaaataatacaaggggaaatcggttaccgc 14732433  T
Q  271 -aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
     |||| ||| ||||||||||||||||||||||||||||||    
T  14732434 aaaaataccagctcgaacaaaaaccccttaaaaaccaccc 14732473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 41378216 - 41378332
Alignment:
Q  191 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaa 289  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    ||| ||||||||||||||||||||| |||| |||||||||| ||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtggaaaaat---aca-aaggggaaatcggttgccacacaaactccggctcgaataa 41378311  T
Q  290 aaacccc-ttaaaaaccaccc 309  Q
    ||||||| |||||||||||||    
T  41378312 aaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 166 - 303
Target Start/End: Original strand, 22649053 - 22649193
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggt 264  Q
    ||||| |||||||| ||||||||  ||||||||||| |||||||||||||| | ||||| ||||| || | || ||||| | | | ||||||||||||||    
T  22649053 tttttttttttgaagcggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagagaaaaaaacaaagaaggggaaatcggt 22649152  T
Q  265 tgcca--caaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    |||||  | ||||||||||| || |||||||||||| ||||    
T  22649153 tgccattccaaacaccggcttgatcaaaaacccctttaaaa 22649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 43356803 - 43356750
Alignment:
Q  190 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 243  Q
    |||||||||||| ||| |||||||||||||||||| ||| |||| || ||||||    
T  43356803 attattaaccaataagtccgtgcaagatgcactaataagttcgggtgaaaaaaa 43356750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 40930818 - 40930961
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-aaaaaataaacacaaggggaaatcggt 264  Q
    ||||| ||||||||| ||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||| |||||||| | ||||||||||||||||    
T  40930818 tttttttttttgaaatggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggt 40930917  T
Q  265 tgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    || ||| ||||| |||||||||||||||| |||||||||||||||    
T  40930918 tgtcac-aaacaacggctcgaacaaaaactccttaaaaaccaccc 40930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 166 - 302
Target Start/End: Original strand, 13959207 - 13959347
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcg 262  Q
    ||||| ||||||||||||||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| |||   |||||||| | |||| || ||||||    
T  13959207 tttttttttttgaaacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtggaaaaaaaaatacaaacaaaggaaaatcg 13959306  T
Q  263 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaa 302  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  13959307 gttgccacataaacaccggctcaaacaaaaaccccttaaaa 13959347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 309
Target Start/End: Original strand, 24200614 - 24200753
Alignment:
Q  170 tatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcca 269  Q
    ||||||| || |||||||| |||||||| ||| ||| |||||||||| ||||||| ||||| || ||||||||| | | ||||||||||||||||||||     
T  24200614 tattttttaatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaaggggaaatcggttgccg 24200713  T
Q  270 c-aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    | |||||||||||||||||||||| | ||||||||||||||    
T  24200714 caaaaacaccggctcgaacaaaaa-cacttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 25829259 - 25829399
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgcc 268  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | ||||||||||||||||| ||    
T  25829259 tttttgaatcggcaaata-ttattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaaatacaaacaaggggaaatcggtttcc 25829357  T
Q  269 aca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
      | ||||||||||| ||| ||||||||||||||||||||||    
T  25829358 ctataaacaccggcttgaataaaaaccccttaaaaaccaccc 25829399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 165 - 309
Target Start/End: Original strand, 5200469 - 5200615
Alignment:
Q  165 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcgg 263  Q
    |||||| ||||| || |||||||| |||||||||||| ||| ||||||||||  |||||| ||| | || |||| |||| || | ||||||| |||||||    
T  5200469 cttttttttttttaatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaacatacaagggaaaatcgg 5200568  T
Q  264 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||    
T  5200569 ttgccgcacaaacaccggctcgaacaaaaaccccttaaaaatcaccc 5200615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 173 - 309
Target Start/End: Complemental strand, 22839391 - 22839250
Alignment:
Q  173 ttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga--aaaaataaacacaaggggaaatcggttgcc-- 268  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||| |||||||||  ||||| | | | ||| ||||||||||||||      
T  22839391 ttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccat 22839292  T
Q  269 acaaaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 309  Q
    | |||||| ||||||||||||||| ||| |||||||||||||    
T  22839291 ataaaacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 38086402 - 38086551
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcg 262  Q
    ||||| |||| ||| | |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | | ||||| ||||||    
T  38086402 ttttttttttagaatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcg 38086501  T
Q  263 gttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 309  Q
    ||||||| | |||| | ||||||||||||||||||||  |||||||||||    
T  38086502 gttgccatacaaactctggctcgaacaaaaacccctttaaaaaaccaccc 38086551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 303
Target Start/End: Complemental strand, 10124935 - 10124866
Alignment:
Q  236 ggaaaaaataaacacaaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    |||||||| | | ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  10124935 ggaaaaaaaacaaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 10124866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 30836116 - 30836272
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaac----aagctcggatgga-------aaaaataaacacaagg 254  Q
    ||||| |||||||| |||||||| |||||||||||| |||| ||||| ||| |||||||     |||||||||||||       ||||| ||| | ||||    
T  30836116 tttttttttttgaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaattaataagctcggatggagaaaaaaaaaaaaaaaaagaagg 30836215  T
Q  255 ggaaatcggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 309  Q
    |||||||| ||||| || ||| ||||||||||||||||||||| |||||||||||||    
T  30836216 ggaaatcgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccaccc 30836272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 7845184 - 7845135
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaag 215  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  7845184 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaag 7845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 44362918 - 44362994
Alignment:
Q  167 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 243  Q
    |||| |||||||||||| |||  |||||||||||| || || |||||||| ||||||| ||| ||||||||||||||    
T  44362918 ttttttttttgaaacggaaaattattattaaccaacaatcctgtgcaagaagcactaataagttcggatggaaaaaa 44362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 38542725 - 38542786
Alignment:
Q  79 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtg 140  Q
    |||||||||||||| ||||| || | ||||||||| || |||||||||||||||| ||||||    
T  38542725 taagagaaaacaactttgaaagaaagtgagaggaaatgatgttggtgatgtgagaatgagtg 38542786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 584123 - 584187
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 230  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  584123 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 7845138 - 7845080
Alignment:
Q  250 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    |||||||||||||||||| |||  |||||||||||||||  || |||||||||||||||||    
T  7845138 caaggggaaatcggttgcaacattaacaccggctcgaac--aatccccttaaaaaccaccc 7845080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 182 - 303
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  182 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccac-aaaacacc 278  Q
    ||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||  |||||||||| |||||||||||||||||||| | ||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  279 ggctcgaacaaaaaccccttaaaaa 303  Q
    || |||||||||| ||| |||||||    
T  16572098 ggttcgaacaaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 167 - 301
Target Start/End: Original strand, 47571560 - 47571694
Alignment:
Q  167 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcggtt 265  Q
    |||| |||||||| |||||||| |||||||||||| || |||||| |||  ||||||| |||||||| ||  |||||||||| ||||||| |||| ||||    
T  47571560 ttttttttttgaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtgaaaaaaaataaatacaagggaaaattggtt 47571659  T
Q  266 gccacaaaacaccggctcgaacaaaaaccccttaaa 301  Q
    ||||| |||||||||||| |||||||||||||||||    
T  47571660 gccac-aaacaccggctcaaacaaaaaccccttaaa 47571694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 166 - 309
Target Start/End: Complemental strand, 32183425 - 32183275
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaag-aagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacaca--aggggaaatc 261  Q
    ||||| ||||| || |||||||| ||||||||||||  |||||||||||||  ||||||| |||||||| ||||| |||| ||||| |  ||||||||||    
T  32183425 tttttttttttaaatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatc 32183326  T
Q  262 ggttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 309  Q
    |||||||| | |||||||||||||||||||||||||||  |||||||||||    
T  32183325 ggttgccatacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 32183275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 15186975 - 15187072
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggttgcc 268  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||| |||||  || ||||||||||||||||||||    
T  15186975 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggataaaaaagaatacaaggggaaatcggttgcc 15187072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 5341793 - 5341706
Alignment:
Q  79 taagagaaaacaaccttgaatgagattgagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatatatttataggagct 166  Q
    ||||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||| | ||||||  | ||||||||||||||    
T  5341793 taagagaaaacgaccttgaaagagaatgagaggaagtgatgttggtgatgtgagagtgagtctgagggtttgtttatttataggagct 5341706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 306
Target Start/End: Original strand, 55133102 - 55133233
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 271  Q
    ||||||||||| ||||| ||||||||||   |||||||||||||| ||||||| || |||||||| ||| || | | |||| ||||||| | ||||||||    
T  55133102 tttttgaaacgacaaaatattattaacc---aagcccgtgcaagaagcactaataaactcggatgaaaagaaaacaaacaa-gggaaattgattgccaca 55133197  T
Q  272 -aaacaccggctcgaacaaaaaccccttaaaaacca 306  Q
     ||||| | |||||||||||||||| ||||||||||    
T  55133198 caaacatcagctcgaacaaaaaccctttaaaaacca 55133233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 25641263 - 25641407
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 267  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||| ||||||| ||||| || |||    |||||||| | | |||||||||| ||||||    
T  25641263 tttttgaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgc 25641362  T
Q  268 caca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 309  Q
    || |  |||| |||||||||||||||||| ||  |||||||||||    
T  25641363 catactaacatcggctcgaacaaaaacccttttaaaaaaccaccc 25641407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 310
Target Start/End: Original strand, 16662301 - 16662441
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcc--a 269  Q
    |||||||| | |||||| |||||||||||| |||||||||| ||| ||||||| |||||  | ||||||||| |   | ||||| ||||| ||||||  |    
T  16662301 tttttgaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaaa-actaagaagggaaaatctgttgccata 16662399  T
Q  270 caaaacaccggctcgaacaaaaacccc-ttaaaaaccaccct 310  Q
    |||||||| |||||| ||||||||||| ||||||||||||||    
T  16662400 caaaacactggctcgtacaaaaacccctttaaaaaccaccct 16662441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 42390766 - 42390906
Alignment:
Q  172 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcggttgcc 268  Q
    |||||||| |||| |||  |||||  |||| |||||||||||||| | ||||| |||||||| ||||   ||||| ||| | ||||   |||||||||||    
T  42390766 tttttgaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtggagaaaaaaacaaataaaaggaacaatcggttgcc 42390865  T
Q  269 ac-aaaacaccggctcgaacaaaaaccccttaaaaaccacc 308  Q
     | ||||||||||||| ||||||||||||||||||||||||    
T  42390866 gctaaaacaccggctcaaacaaaaaccccttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 25222278 - 25222218
Alignment:
Q  106 gagaggaagtggtgttggtgatgtgagagtgagtgtaagggttgatatatttataggagct 166  Q
    ||||| ||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||    
T  25222278 gagagaaagtgatgttggtgatgtgagagtgagtataaaggtttatttatttataggagct 25222218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 45511390 - 45511440
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaaga 216  Q
    ||||| |||||||| | |||||| |||||||||||| ||||||||||||||    
T  45511390 tttttttttttgaatcagcaaaatattattaaccaacaagcccgtgcaaga 45511440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 23172985 - 23173107
Alignment:
Q  190 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaa 286  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||| |||||| ||||||  | |||||||||||||||    
T  23172985 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggctcgaa 23173084  T
Q  287 caaaaaccccttaaaaaccaccc 309  Q
    ||||| |||||||||||||||||    
T  23173085 caaaacccccttaaaaaccaccc 23173107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 184 - 309
Target Start/End: Complemental strand, 22887337 - 22887211
Alignment:
Q  184 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacacaaggggaaatcggttgccacaaaacaccggct 282  Q
    ||||| |||||||||||| |||||||||| ||||||||||| |||||||| ||| | |||| ||| | ||||| ||||| |||||||||||| || || |    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgggagaaaaaaaatataagggaaaatcagttgccacaaaagacaggtt 22887238  T
Q  283 cgaacaaaaaccccttaaaaaccaccc 309  Q
    | |||||||||||||||||||||||||    
T  22887237 caaacaaaaaccccttaaaaaccaccc 22887211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 166 - 309
Target Start/End: Original strand, 9931785 - 9931935
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-------aaaaaataaacacaaggggaa 258  Q
    ||||| |||||||||||| ||| | ||||||||||| |||||||||||||| ||||||||||||| || |||       |||||||| | || |||||||    
T  9931785 tttttttttttgaaacggtaaata-ttattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgggaagaaaaaaaaatacaaacgaggggaa 9931883  T
Q  259 atcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    |||||||||| || ||||||| |||||||||||||| ||| |||||||||||    
T  9931884 atcggttgccgcacaaacaccagctcgaacaaaaacacctcaaaaaccaccc 9931935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 25539947 - 25539810
Alignment:
Q  184 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcggttgccacaaaacaccg 279  Q
    ||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| || |||||| |    || ||||| |||||||||||||||  ||||| ||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtgaaaaaaaaacaaaaatacaagaggaaatcggttgccatcaaacatcg 25539849  T
Q  280 gctcgaacaaaaaccccttaaaaaccaccctaacactaa 318  Q
    |||||||||||||||||||||||||||||| || |||||    
T  25539848 gctcgaacaaaaaccccttaaaaaccaccccaaaactaa 25539810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 166 - 303
Target Start/End: Complemental strand, 10431204 - 10431063
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac--acaaggggaaatcg 262  Q
    ||||| |||||||||||| |||| |||||||| ||| || ||||||||||| ||| ||| ||| |||| |||| ||||| ||||  |||||| |||||||    
T  10431204 tttttttttttgaaacggaaaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcg 10431105  T
Q  263 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    ||||||||| |||||||| |||||||||||||| | ||||||    
T  10431104 gttgccacacaaacaccgactcgaacaaaaacctcataaaaa 10431063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 303
Target Start/End: Original strand, 819134 - 819254
Alignment:
Q  183 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggttgccacaaaacaccggc 281  Q
    |||||| ||||||| |||| ||| ||||| |||| ||||||| ||| |||| ||||||||| | || |||| |||||||||||||||||||| ||||  |    
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaataaaacaaagggaaatcggttgccacaaa-caccaac 819232  T
Q  282 tcgaacaaaaaccccttaaaaa 303  Q
    ||||||||||||||||||||||    
T  819233 tcgaacaaaaaccccttaaaaa 819254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 167 - 309
Target Start/End: Original strand, 3677779 - 3677924
Alignment:
Q  167 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcg 262  Q
    |||| |||||||| | |||| | ||||||| |||| |||||| ||| ||||||||||| |||||||| ||||||||| |    || |||||||  |||||    
T  3677779 ttttttttttgaatcagcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtggaaaaaaaacaagaatacaagggacaatcg 3677877  T
Q  263 gttgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 309  Q
    |||||| ||| |||| ||||| |||||||||||||||||||||||||    
T  3677878 gttgccgcaatacactggctcaaacaaaaaccccttaaaaaccaccc 3677924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 166 - 294
Target Start/End: Original strand, 42241577 - 42241708
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat--ggaaaaaataaacacaaggggaaatcgg 263  Q
    ||||| ||||| || |||||||| |||||||||||| ||| ||| |||||||||||||| ||||||||||  | |||||||| | | |||||||||||||    
T  42241577 ttttttttttttaatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcggatgagaaaaaaatacaaagaaggggaaatcgg 42241676  T
Q  264 ttgccaca-aaacaccggctcgaacaaaaacc 294  Q
    | |||| | |||| |||||| |||||||||||    
T  42241677 tcgccatacaaactccggcttgaacaaaaacc 42241708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 2292222 - 2292168
Alignment:
Q  251 aaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2292222 aaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 2292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 9597742 - 9597800
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 224  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| |||||||    
T  9597742 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaa 9597800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 166 - 303
Target Start/End: Original strand, 33112703 - 33112844
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagc-tcggatggaaaaaataaaca--caaggggaaatcg 262  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||| | ||  |||||||| |||||  |||||||||||||    
T  33112703 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagcttgggggggaaaaaaaaaacaagcaaggggaaatcg 33112802  T
Q  263 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 303  Q
    ||||||| | ||||   |||||||||||||||||||||||||    
T  33112803 gttgccatacaaactttggctcgaacaaaaaccccttaaaaa 33112844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 10247049 - 10246910
Alignment:
Q  172 tttttgaaacggcaaaaa-attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccac 270  Q
    ||||| || ||||||||| |||||||||||| |||||||||||||| ||||||| | | || | |||| |||| | | | ||||| |||||||||| |||    
T  10247049 ttttttaatcggcaaaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaacaaagaagggaaaatcggttgtcac 10246950  T
Q  271 aaaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 309  Q
    | |||||||||||||||||||||||| |||||||||||||    
T  10246949 acaacaccggctcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 165 - 397
Target Start/End: Complemental strand, 11546912 - 11546685
Alignment:
Q  165 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcgg 263  Q
    |||||| ||||| ||||||||||| |||||||||  | |||||||||||||  ||||||| |||||||| || ||||||| | | | |||| ||||||||    
T  11546912 cttttttttttttaaacggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggtgagaaaaaaaacaaagaaggagaaatcgg 11546813  T
Q  264 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatataca 362  Q
    ||| || | |||||||||||||||||||||| |||||||||     ||| | |||| | |  |||||||    |||| | ||||||||||||||||||||    
T  11546812 ttgtcatacaaacaccggctcgaacaaaaactccttaaaaa----actacccctaaagaaggaactacc---tacaagagtaatgacgcagacatataca 11546720  T
Q  363 aatgacaatccgcaagcatacccctgcatcaacac 397  Q
     |||||||||| || | |||||||||| |||||||    
T  11546719 tatgacaatcctcatgaatacccctgcgtcaacac 11546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 6575860 - 6575720
Alignment:
Q  175 ttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccac 270  Q
    ||||| |||||||| |||||||| ||| |||||||||||||| ||||||| ||| |||| |||    |||||||| |||||| || ||||| |||| ||     
T  6575860 ttgaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtggaagaaaaaaatacacacaaaggaaaatcagttgtcat 6575761  T
Q  271 a-aaacaccggctcgaacaaaaaccccttaaaaaccaccct 310  Q
    | ||||| ||||||||||||||||| |||||||||||||||    
T  6575760 acaaacatcggctcgaacaaaaacctcttaaaaaccaccct 6575720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 167 - 309
Target Start/End: Complemental strand, 15859244 - 15859093
Alignment:
Q  167 ttttatttttgaaacggcaaaaaattattaaccaaga--agcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaa----ggggaaat 260  Q
    |||| |||| ||| |||||||| |||||||| ||| |  ||||||||||||  ||||||| |||||||| |||| |||| ||| ||||    ||||||||    
T  15859244 tttttttttagaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaat 15859145  T
Q  261 cggttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 309  Q
    ||||||||| | |||||||||||||||||||||||||||  |||||||||||    
T  15859144 cggttgccaaacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 15859093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 397
Target Start/End: Complemental strand, 34761306 - 34761080
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcgg 263  Q
    ||||| |||||||||||||||| | ||||||| | | |||||||||||||  ||||||| |||||||| |||  |||||||| | | |||  ||||||||    
T  34761306 tttttttttttgaaacggcaaata-ttattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcgg 34761208  T
Q  264 ttgccaca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatac 361  Q
    ||| || | |||||||| ||||||||||||| |||| |||||||||||     |||| | |  |||||||    |||| | ||||||||||| |||||||    
T  34761207 ttgtcatacaaacaccgactcgaacaaaaactccttaaaaaaccaccc-----ctaaagaaggaactacc---tacaacagtaatgacgcaggcatatac 34761116  T
Q  362 aaatgacaatccgcaagcatacccctgcatcaacac 397  Q
    | |||||||||| || | |||||||||| |||||||    
T  34761115 atatgacaatcctcatgaatacccctgcgtcaacac 34761080  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 33984814 - 33984753
Alignment:
Q  250 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccc 309  Q
    |||||||||||||||||||| | |||||| || ||||||||||||||||| |||||||||||    
T  33984814 caaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccaccc 33984753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 12754422 - 12754465
Alignment:
Q  181 cggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 224  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  12754422 cggcaaaaaattattaaccaacaaacccgtgcaagacgcactaa 12754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 12883 - 12947
Alignment:
Q  166 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 230  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  12883 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

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Target: scaffold0343 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 8012 - 7956
Alignment:
Q  168 tttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 224  Q
    ||||||||| || |||||||| |||||||||||| |||||  ||||| |||||||||    
T  8012 tttatttttaaatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaa 7956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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