View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12878_low_20 (Length: 255)
Name: NF12878_low_20
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 39579935 - 39580160
Alignment:
| Q |
17 |
agttggtacattcaggaattttttgaagcatattgcaaccactgacatcaagttttgtcaagtgatcagactctttaatgcatgcagggagggagaccaa |
116 |
Q |
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| T |
39579935 |
agttggtacattcaggaattttttgaagcatattgcaaccactgacatcaagttttgtcaagtgatcagactctttaatgcatgcagggagggagaccaa |
39580034 |
T |
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| Q |
117 |
attgttatctgaagcaatcaatttttctaattttggaaaatatatgagaatttcctgaatatcttcatctgacaaaccactatttccaaaatgcatcgct |
216 |
Q |
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| T |
39580035 |
attgttatctgaagcaatcaatttttctaattttggaaaatatatgagaatttcctgaatatcttcatctgacaaaccgctatttccaaaatgcatcgct |
39580134 |
T |
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| Q |
217 |
tttactgttgaactttcattggcttc |
242 |
Q |
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| T |
39580135 |
tttactgttgaactttcattggcttc |
39580160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 229
Target Start/End: Complemental strand, 39622330 - 39622130
Alignment:
| Q |
29 |
caggaattttttgaagcatattgcaaccactgacatcaagttttgtcaagtgatcagactctttaatgcatgcagggagggagaccaaattgttatctga |
128 |
Q |
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||||||||| | |||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||| ||||| ||||| || || || |
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| T |
39622330 |
caggaatttctcgaagcatattgcaaccactgacatcaagctttgtcaagtgagcagagtctttaatgcacacagggagagagacaaaattattgtcaga |
39622231 |
T |
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| Q |
129 |
agcaatcaatttttctaattttggaaaatatatgagaatttcctgaatatcttcatctgacaaaccactatttccaaaatgcatcgcttttactgttgaa |
228 |
Q |
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| T |
39622230 |
tgcaatcaactcttgtaattcaagaaaagagataagaattgccttaagatcttcatcagacaaaccactatttccaaaatgcaatgcttttaatgttgaa |
39622131 |
T |
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| Q |
229 |
c |
229 |
Q |
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| T |
39622130 |
c |
39622130 |
T |
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