View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12878_low_21 (Length: 241)
Name: NF12878_low_21
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_low_21 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 151199 - 150976
Alignment:
| Q |
1 |
cttcaaattcttccactcggtatattcaaaagttccatgcccttggtgcactttaactcttctgttgttcacctcaatatcctgtgcaagtattcttgct |
100 |
Q |
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| T |
151199 |
cttcaaattcttccactcggtatattcaaaagttccatgcccttggtgcactttaactcttctgttgttcacctcaatatcctgtgcaagtattcttgct |
151100 |
T |
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| Q |
101 |
aaattatacactatgcacatgataacagaacttaaaatgaaggaaacatattaattttgtctaatacacatgtaggaaatattgtagcagnnnnnnngag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
151099 |
aaattatacactatgcacatgataacagaacttaaaatgaaggaaacatattaattttgtctaatacacatgtaggaaatattgtagcagaaaaaaagag |
151000 |
T |
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| Q |
201 |
tacataagaaaccatattagacgt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
150999 |
tacataagaaaccatattagacgt |
150976 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 29591604 - 29591638
Alignment:
| Q |
50 |
actttaactcttctgttgttcacctcaatatcctg |
84 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
29591604 |
actttaactcttctattgttcacctcaatatcctg |
29591638 |
T |
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