View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12878_low_25 (Length: 203)

Name: NF12878_low_25
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12878_low_25
NF12878_low_25
[»] scaffold2156 (1 HSPs)
scaffold2156 (39-187)||(536-684)
[»] scaffold0640 (1 HSPs)
scaffold0640 (39-187)||(4646-4794)
[»] chr3 (23 HSPs)
chr3 (28-176)||(19354096-19354244)
chr3 (27-176)||(19380138-19380287)
chr3 (27-170)||(18015339-18015482)
chr3 (27-176)||(18102699-18102848)
chr3 (27-176)||(19413435-19413584)
chr3 (27-171)||(19333238-19333382)
chr3 (39-176)||(19374930-19375067)
chr3 (39-173)||(19398983-19399117)
chr3 (27-176)||(19436137-19436286)
chr3 (27-176)||(19460768-19460917)
chr3 (28-176)||(19350666-19350814)
chr3 (38-176)||(17941001-17941139)
chr3 (38-176)||(18115201-18115339)
chr3 (27-154)||(18164420-18164547)
chr3 (43-176)||(25462310-25462440)
chr3 (38-176)||(19392394-19392532)
chr3 (38-154)||(18146109-18146225)
chr3 (27-160)||(16676459-16676592)
chr3 (38-153)||(24494023-24494138)
chr3 (27-176)||(18107685-18107834)
chr3 (27-154)||(18143559-18143686)
chr3 (27-169)||(19419235-19419377)
chr3 (27-176)||(14896984-14897130)
[»] chr6 (1 HSPs)
chr6 (27-176)||(13667495-13667644)
[»] chr8 (1 HSPs)
chr8 (29-153)||(8458765-8458889)
[»] chr4 (1 HSPs)
chr4 (38-149)||(15531647-15531758)


Alignment Details
Target: scaffold2156 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 536 - 684
Alignment:
Q  39 gactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcga 138  Q
    |||||||||||| ||||||||||| ||||| |||||||| ||||| |||  |||| |||||| | ||||  ||||||| ||||||||||||||||| |||    
T  536 gactccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctcacga 635  T
Q  139 tctttctcattgcatctaaccacagtgtgattggtgcaagtgattttgt 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  636 tctttctcattgcatctaaccacagtgtgattggtgcaagtgattttgt 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 4794 - 4646
Alignment:
Q  39 gactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcga 138  Q
    |||||||||||| ||||||||||| ||||| |||||||| ||||| |||  |||| |||||| | ||||  ||||||| ||||||||||||||||| |||    
T  4794 gactccttcccatgcacaacaatctttttcggttgaccacgttgatatcccaccaagactatcattgatgtcctgtttgaaggttaacaatgtctcacga 4695  T
Q  139 tctttctcattgcatctaaccacagtgtgattggtgcaagtgattttgt 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4694 tctttctcattgcatctaaccacagtgtgattggtgcaagtgattttgt 4646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 19354244 - 19354096
Alignment:
Q  28 ttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaaca 127  Q
    ||||| ||| ||||| ||||||||| ||||||||| |||||||| |||||  |||||||| ||||| |||||| | ||||||||||||||||||||||||    
T  19354244 ttgtcacagtggacttcttcccaagaacaacaatctttttcagtcgaccacattgaaatcataccaagactatcattgattccctgtttaaaggttaaca 19354145  T
Q  128 atgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    ||||||||||||||||||||||||||| ||||| |||||||||| ||||    
T  19354144 atgtctctcgatctttctcattgcatcgaaccatagtgtgattgttgca 19354096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 19380287 - 19380138
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||| ||| |||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||     
T  19380287 gttgtcacagtggacacctttccaagcacaacaatcattttcagttgaccacgttgaaatcgtaccaagactatcattgattccctgtttaaaggttaag 19380188  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    | | ||||| ||||||||||||| |||| |||||| ||||||||| ||||    
T  19380187 agtatctctagatctttctcattacatcgaaccactgtgtgattgctgca 19380138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 18015482 - 18015339
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||| ||| ||||||||||||||| ||||||||| ||||| || ||||| ||||||||| |||||  ||||| | ||||||| ||||| |||||||||    
T  18015482 gttgtcacagtggactccttcccaagaacaacaatctttttctgtcgaccacgttgaaatcataccaaaactatcattgattccttgtttgaaggttaac 18015383  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgatt 170  Q
    | |||||||||||||||||||||||||| |||||  ||||||||    
T  18015382 agtgtctctcgatctttctcattgcatcgaaccaatgtgtgatt 18015339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 18102848 - 18102699
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||| ||| |||||||||||||||||||| |||| ||||  |||||||| |||||||||  ||||  ||||| | |||| || ||||| |||||||||    
T  18102848 gttgtcacagtggactccttcccaagcacaaaaatcttttttggttgaccacgttgaaatccgaccaaaactatcattgatgccatgtttgaaggttaac 18102749  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    | ||||||  |||||||||||||||||| |||||| ||||||||||||||    
T  18102748 agtgtctcatgatctttctcattgcatcgaaccactgtgtgattggtgca 18102699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 19413584 - 19413435
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||||||| |||||||||||||| |||||||||| ||||| |||||||| ||||| |||  |||| |||||| | |||| ||||| || |||||||||    
T  19413584 gttgtcgcagtggactccttcccaaccacaacaatctttttcggttgaccacgttgatatccaaccaagactatcagtgataccctggttgaaggttaac 19413485  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    | |||||||||||| ||||||||||||| ||| || ||| ||||| ||||    
T  19413484 agtgtctctcgatcattctcattgcatcgaacaactgtgggattgttgca 19413435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 19333382 - 19333238
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    ||||||||||||||||||||||||  | |||||||| |||||||||||||| ||||| |||  |||| |||||| |  ||| |||||| | || ||||||    
T  19333382 gttgtcgcagcggactccttcccatacgcaacaatctttttcagttgaccacgttgatatccgaccaagactatcatggatgccctgtctgaacgttaac 19333283  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgattg 171  Q
    |||||||||||||||||||||||||| | ||| || |||||||||    
T  19333282 aatgtctctcgatctttctcattgcagcgaacaactgtgtgattg 19333238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 19375067 - 19374930
Alignment:
Q  39 gactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcga 138  Q
    |||||||||||||| ||||||||| |||||| | ||||| | ||||||| |||||  ||||| | ||||||||| ||| |||||||| | ||||||||||    
T  19375067 gactccttcccaagaacaacaatctttttcaatcgaccacgatgaaatcataccaaaactatcattgattccctctttgaaggttaatagtgtctctcga 19374968  T
Q  139 tctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    |||||||||||||||| |||||  ||||||||| ||||    
T  19374967 tctttctcattgcatcgaaccaatgtgtgattgctgca 19374930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 19399117 - 19398983
Alignment:
Q  39 gactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcga 138  Q
    ||||||||||||||| |||||||| ||||  |||||||| ||||| |||  |||| |||||| | |||| || ||||| ||| |||||| ||||||||||    
T  19399117 gactccttcccaagcgcaacaatcttttttggttgaccacgttgatatccgaccaagactatcattgatgccttgtttgaagtttaacagtgtctctcga 19399018  T
Q  139 tctttctcattgcatctaaccacagtgtgattggt 173  Q
    |||||||||||||||| ||| || |||||||||||    
T  19399017 tctttctcattgcatcgaacaactgtgtgattggt 19398983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 19436286 - 19436137
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||| ||| |||| |||  ||||||||||||||| ||||| |||||||| ||||| |||  ||||  ||||| | |||| || ||||| |||||||||    
T  19436286 gttgtcacagtggacacctctccaagcacaacaatctttttcggttgaccacgttgatatccgaccaaaactatcattgatgccttgtttgaaggttaac 19436187  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    | ||||||| |||||||||||||||||| |||||| ||||||||| ||||    
T  19436186 agtgtctcttgatctttctcattgcatcgaaccactgtgtgattgctgca 19436137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 19460917 - 19460768
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||| ||| |||||||||||||||||||||||||  |||| |||||||| ||| | |||  |||| || | | | ||||||| | ||| ||||||||     
T  19460917 gttgtcacagtggactccttcccaagcacaacaatctatttcggttgaccatgttaatatccgaccaagagtgtcattgattccttatttgaaggttaag 19460818  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    | |||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  19460817 agtgtctctcgatctttctcattgcatccaaccactgtgtgattgctgca 19460768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 19350814 - 19350666
Alignment:
Q  28 ttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaaca 127  Q
    ||||||||| ||||||| |||||  |||||| ||| |||||| ||||||| ||||| |||  ||||  | ||| | |||| || ||||||||||||||||    
T  19350814 ttgtcgcagtggactccgtcccatacacaactatctttttcaattgaccatgttgatatccaaccaaaattatcattgatgccatgtttaaaggttaaca 19350715  T
Q  128 atgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    ||||||||| ||||||||||||||||  |||||  ||||||||||||||    
T  19350714 atgtctctctatctttctcattgcattgaaccaatgtgtgattggtgca 19350666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 17941139 - 17941001
Alignment:
Q  38 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 137  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||| ||   |||| |||||| | |||| || ||||| |||||||| | |||||| ||    
T  17941139 ggactccttcccaagcacaacaatcatttttggttgaccacgttgatattcgaccaagactatcattgatgccatgtttgaaggttaatagtgtctcgcg 17941040  T
Q  138 atctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    ||||||||||||||||  ||| || ||||||||| ||||    
T  17941039 atctttctcattgcattgaacaactgtgtgattgctgca 17941001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 18115339 - 18115201
Alignment:
Q  38 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 137  Q
    |||||||||||||||||||||||||  |||| |||||||| ||| | |||  |||| || | | | ||||||| | ||| |||||||| | |||||||||    
T  18115339 ggactccttcccaagcacaacaatctatttcggttgaccacgttaatatccgaccaagagtgtcattgattccttttttgaaggttaagagtgtctctcg 18115240  T
Q  138 atctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    ||||||||||||||||| |||||| ||||||||| ||||    
T  18115239 atctttctcattgcatccaaccactgtgtgattgctgca 18115201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 18164547 - 18164420
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||||||| |||||||||||||  |||||||||| ||||| |||||||| ||||| |||  ||||  ||||| | |||| || ||| | || ||||||    
T  18164547 gttgtcgcagtggactccttcccatacacaacaatctttttcggttgaccacgttgatatccgaccaaaactatcattgatgccgtgtctgaacgttaac 18164448  T
Q  127 aatgtctctcgatctttctcattgcatc 154  Q
    ||||||||||||||||| ||||||||||    
T  18164447 aatgtctctcgatctttttcattgcatc 18164420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 25462440 - 25462310
Alignment:
Q  43 ccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcgatctt 142  Q
    |||||||| ||||||||||| |||||||   ||||  |||||||| ||||| |||| | | |||| || ||||| |||||||||| |||||| || ||||    
T  25462440 ccttcccatgcacaacaatctttttcag---accacattgaaatcataccaagactgtcattgatgccatgtttgaaggttaacagtgtctcacggtctt 25462344  T
Q  143 tctcattgcatctaaccacagtgtgattggtgca 176  Q
    |||||||||||| |||||||||||||||| ||||    
T  25462343 tctcattgcatcgaaccacagtgtgattgttgca 25462310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 19392532 - 19392394
Alignment:
Q  38 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 137  Q
    |||| |||||||||||||||||||| ||||  |||| |||  |||| |||  |||| || ||||| |||| || ||||| |||||||||| |||||||||    
T  19392532 ggacaccttcccaagcacaacaatctttttttgttgtccacattgatatccgaccaagattataattgatgccttgtttgaaggttaacagtgtctctcg 19392433  T
Q  138 atctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    |||||||||||| |||  |||||| ||||||||| ||||    
T  19392432 atctttctcattacattgaaccacggtgtgattgatgca 19392394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 18146225 - 18146109
Alignment:
Q  38 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 137  Q
    ||||||||| |||| |||||||||| |||||||||||||| |||||||||  ||||  ||||| | |||| |||| ||| |||||| ||| ||||||  |    
T  18146225 ggactcctttccaaacacaacaatctttttcagttgaccacgttgaaatccgaccaaaactatcattgatgccctttttgaaggttgacagtgtctcatg 18146126  T
Q  138 atctttctcattgcatc 154  Q
    |||||||||||||||||    
T  18146125 atctttctcattgcatc 18146109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 16676592 - 16676459
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||||||  |||||||||||||  ||||||| || |||||||||||||| ||||| |||  || |  ||||  | |||| || ||||| |||||||||    
T  16676592 gttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatatccgactaaaactaccattgatgccttgtttgaaggttaac 16676493  T
Q  127 aatgtctctcgatctttctcattgcatctaacca 160  Q
    ||||||| | |||| |||||||||||||||||||    
T  16676492 aatgtcttttgatccttctcattgcatctaacca 16676459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 24494023 - 24494138
Alignment:
Q  38 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 137  Q
    ||||||||| ||| ||||||||||| ||| | |||||||| |||||||||  |||| |||||| |  ||| |  ||||| |||| ||||| |||||||||    
T  24494023 ggactcctttccatgcacaacaatcttttacggttgaccatgttgaaatcagaccaagactatcatcgatgctttgtttgaaggctaacagtgtctctcg 24494122  T
Q  138 atctttctcattgcat 153  Q
    ||||||||||||||||    
T  24494123 atctttctcattgcat 24494138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 18107834 - 18107685
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||| ||| ||||| |||||||  |||||||||| ||||| ||||||||  |||||| | | | | |||||| | |||| || ||||| ||||||||     
T  18107834 gttgtcacagtggacttcttcccatacacaacaatctttttcggttgaccaccttgaaaacatgctaagactattattgatgccatgtttgaaggttaag 18107735  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    | | | ||| |||||||||||||||||| |||||| ||||||||| ||||    
T  18107734 agtatatctagatctttctcattgcatcgaaccactgtgtgattgctgca 18107685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 18143686 - 18143559
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    ||||||||||  ||||||||||||  | |||||||  |||||||||||||| ||||| ||   |||| |||||| | |||| |||  ||| ||| |||||    
T  18143686 gttgtcgcagtagactccttcccatacgcaacaatttttttcagttgaccatgttgatatttgaccaagactatcattgatgccccatttgaagcttaac 18143587  T
Q  127 aatgtctctcgatctttctcattgcatc 154  Q
    |||||||||| ||||||||| |||||||    
T  18143586 aatgtctctcaatctttctcgttgcatc 18143559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 19419377 - 19419235
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||| ||| |||||||||||||  |||||||||| ||||| | ||||||  |||||| |   | | |||||| | |||| |||||||| ||||||||     
T  19419377 gttgtcacagtggactccttcccatacacaacaatctttttctgctgaccaccttgaaaacaggctaagactattattgatgccctgtttgaaggttaag 19419278  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgat 169  Q
    | | ||||| |||||||||||||||||| |||||  |||||||    
T  19419277 agtatctctagatctttctcattgcatcgaaccattgtgtgat 19419235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 14896984 - 14897130
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||||||| ||||||||||||||||||||||||| |||||    |||||  |||| |||  ||||  | ||| |  ||| || ||||| ||| |||||    
T  14896984 gttgtcgcagtggactccttcccaagcacaacaatctttttc---ggaccatattgatatccgaccaaaagtatcatggatgccttgtttgaagtttaac 14897080  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    ||| |||| ||||||||||||||||||  |||||| ||||| ||| ||||    
T  14897081 aatatctcacgatctttctcattgcattgaaccacggtgtggttgctgca 14897130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 13667495 - 13667644
Alignment:
Q  27 gttgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaac 126  Q
    |||||| ||| |||||||||||||||||||||||   ||||| |||||||| ||||| |||  |||| || | | | ||| ||||||||| ||||||||     
T  13667495 gttgtcacagtggactccttcccaagcacaacaacttttttcggttgaccacgttgatatccgaccaagagtgtcattgactccctgtttgaaggttaag 13667594  T
Q  127 aatgtctctcgatctttctcattgcatctaaccacagtgtgattggtgca 176  Q
    | |||||||||||||||||||||||||  |||||  ||||||||| ||||    
T  13667595 agtgtctctcgatctttctcattgcattgaaccaatgtgtgattgttgca 13667644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 8458889 - 8458765
Alignment:
Q  29 tgtcgcagcggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaa 128  Q
    |||| ||| ||||||||| ||| ||||||||||| |||||||||||||| ||||| ||  ||||| |||||| | |||  |||||||| ||||||||||     
T  8458889 tgtcacagtggactcctttccacgcacaacaatctttttcagttgaccacgttgatattataccacgactatcattgaggccctgtttgaaggttaacat 8458790  T
Q  129 tgtctctcgatctttctcattgcat 153  Q
    ||| | ||| || ||||||||||||    
T  8458789 tgtttgtcggtcattctcattgcat 8458765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 149
Target Start/End: Complemental strand, 15531758 - 15531647
Alignment:
Q  38 ggactccttcccaagcacaacaatcattttcagttgaccaagttgaaatcgtaccatgactataactgattccctgtttaaaggttaacaatgtctctcg 137  Q
    |||||||| |||||||||||||||  |||||| | |||||  ||||||||  ||||  ||||| | |||  |||||||| |||||||||| |||||||||    
T  15531758 ggactcctccccaagcacaacaatttttttcaatagaccacattgaaatccgaccaaaactatcattgacaccctgtttgaaggttaacagtgtctctcg 15531659  T
Q  138 atctttctcatt 149  Q
    ||||||||||||    
T  15531658 atctttctcatt 15531647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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