View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12878_low_3 (Length: 491)
Name: NF12878_low_3
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 29 - 391
Target Start/End: Original strand, 2558189 - 2558552
Alignment:
| Q |
29 |
acagcctacaataaagcacttctagtatctacattcaatagcataattggtgtaataggggatcagaggatcacttcaaacaatctaggttccaaccaaa |
128 |
Q |
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| T |
2558189 |
acagcctacaataaagcacttctagtatctacattcaatagcataattggtgtaataggggatcagaggatcacttcaaacaatctaggttccaaccaaa |
2558288 |
T |
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| Q |
129 |
caaccataatgaaatcttggttataaaacttgattgttatttacatatccattaagctatttatcataaacaaattccacagatagaaaagtgaacatac |
228 |
Q |
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| T |
2558289 |
caaccataatgaaatcttggttataaaacttgactgttatttacatatccattaagctatttatcataaacaaattccacagatagaaaagtgaacatac |
2558388 |
T |
|
| Q |
229 |
cactatatggtatgaacggaagtatttaagttggtccaacattttaatctgccaccaaagactttattaa-nnnnnnnaattgtaaccatttaatctttt |
327 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2558389 |
cactatatggtatgaacggaagtatttaagttcgtccaacattttaatctgccaccaaagactttattaattttttttaattgtaaccatttaatctttt |
2558488 |
T |
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| Q |
328 |
tgttaaaaaataaaccgttagattttatatgtctattgtatttaatagtgcaccatactaccta |
391 |
Q |
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| T |
2558489 |
tgttaaaaaataaaccattagattttatatgtctattgtatttaatagtgcaccatactaccta |
2558552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 38 - 252
Target Start/End: Original strand, 2578519 - 2578737
Alignment:
| Q |
38 |
aataaagcacttctagtatctacattcaatagcataattggtgtaataggggatcagaggatcacttcaaacaatctaggttccaaccaaacaaccataa |
137 |
Q |
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| T |
2578519 |
aataaagcacttctagtatctagattcaatagcataaatggtgtaatagg--atcagaggatcacttcgaacaatctaggttccaatcaaagaaccataa |
2578616 |
T |
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| Q |
138 |
tgaaatcttggttataaaacttgattgt--------tatttacatatccattaagctatttatcataaacaaattccacagatagaaaagtgaacatacc |
229 |
Q |
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||||||||| |||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2578617 |
tgaaatctttgttatagaacttgattgtttttattatatttacatattcattgagctatttatcataaacaaattccacagatagaaaagtgaacatacc |
2578716 |
T |
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| Q |
230 |
actatatggtatgaacggaagta |
252 |
Q |
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| T |
2578717 |
ac--tatggtatgaacggaagta |
2578737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 343
Target Start/End: Original strand, 27759321 - 27759358
Alignment:
| Q |
306 |
aattgtaaccatttaatctttttgttaaaaaataaacc |
343 |
Q |
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|||| |||||||||||||||||||||||||| |||||| |
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| T |
27759321 |
aattttaaccatttaatctttttgttaaaaattaaacc |
27759358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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