View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12878_low_4 (Length: 485)

Name: NF12878_low_4
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12878_low_4
NF12878_low_4
[»] chr8 (16 HSPs)
chr8 (57-338)||(38613476-38613757)
chr8 (335-465)||(6311097-6311229)
chr8 (337-465)||(7290080-7290211)
chr8 (338-463)||(36979184-36979308)
chr8 (338-463)||(4760242-4760366)
chr8 (338-463)||(30655448-30655572)
chr8 (1-65)||(38612154-38612218)
chr8 (359-465)||(39784977-39785086)
chr8 (338-444)||(18853356-18853457)
chr8 (338-457)||(18870734-18870849)
chr8 (359-442)||(25328456-25328540)
chr8 (329-463)||(10689309-10689442)
chr8 (374-463)||(33037972-33038063)
chr8 (359-442)||(35745213-35745298)
chr8 (359-433)||(10684452-10684528)
chr8 (336-412)||(19752609-19752683)
[»] chr5 (21 HSPs)
chr5 (337-465)||(1457315-1457446)
chr5 (338-465)||(27444771-27444901)
chr5 (338-465)||(43592080-43592210)
chr5 (338-465)||(43598525-43598655)
chr5 (338-465)||(43604017-43604147)
chr5 (338-465)||(43609509-43609639)
chr5 (338-465)||(27449615-27449745)
chr5 (355-465)||(30631227-30631338)
chr5 (359-465)||(28807729-28807837)
chr5 (359-465)||(15044512-15044618)
chr5 (338-403)||(31180079-31180142)
chr5 (359-442)||(37556802-37556887)
chr5 (359-442)||(37561624-37561709)
chr5 (338-463)||(38191983-38192105)
chr5 (338-463)||(38219208-38219330)
chr5 (359-442)||(2785197-2785282)
chr5 (359-442)||(31397171-31397256)
chr5 (359-442)||(31402028-31402113)
chr5 (377-442)||(33791158-33791223)
chr5 (338-394)||(35387474-35387527)
chr5 (377-442)||(33768021-33768086)
[»] chr4 (11 HSPs)
chr4 (337-465)||(51520257-51520388)
chr4 (359-465)||(9224560-9224668)
chr4 (359-465)||(9229347-9229455)
chr4 (337-465)||(56146865-56146996)
chr4 (359-464)||(3813846-3813954)
chr4 (359-465)||(18855549-18855657)
chr4 (359-463)||(45347973-45348079)
chr4 (359-463)||(45357452-45357558)
chr4 (338-463)||(24741748-24741871)
chr4 (359-465)||(5732486-5732593)
chr4 (338-463)||(29760449-29760572)
[»] scaffold0135 (1 HSPs)
scaffold0135 (359-465)||(35215-35323)
[»] chr7 (17 HSPs)
chr7 (359-465)||(12396735-12396843)
chr7 (359-465)||(12406155-12406263)
chr7 (359-442)||(24024506-24024589)
chr7 (359-465)||(4866553-4866661)
chr7 (359-465)||(31109737-31109844)
chr7 (336-442)||(2057763-2057866)
chr7 (338-463)||(20357713-20357837)
chr7 (359-465)||(19992135-19992243)
chr7 (359-465)||(21812393-21812501)
chr7 (338-463)||(1533608-1533730)
chr7 (338-463)||(21645818-21645940)
chr7 (338-413)||(2479148-2479221)
chr7 (334-413)||(47263485-47263562)
chr7 (359-433)||(16879894-16879970)
chr7 (359-433)||(16884750-16884826)
chr7 (359-433)||(24261511-24261587)
chr7 (359-433)||(24266390-24266466)
[»] chr6 (15 HSPs)
chr6 (359-465)||(11856795-11856903)
chr6 (359-465)||(14737730-14737838)
chr6 (359-465)||(14742589-14742697)
chr6 (359-465)||(22010850-22010958)
chr6 (359-465)||(6438324-6438431)
chr6 (359-465)||(28184325-28184436)
chr6 (359-442)||(28155749-28155832)
chr6 (338-463)||(5674934-5675057)
chr6 (338-463)||(30125960-30126084)
chr6 (359-442)||(6005239-6005324)
chr6 (377-442)||(5343322-5343387)
chr6 (377-442)||(33330625-33330690)
chr6 (359-442)||(33336122-33336207)
chr6 (359-442)||(16838566-16838651)
chr6 (338-413)||(31936398-31936470)
[»] chr3 (14 HSPs)
chr3 (359-465)||(22173348-22173456)
chr3 (336-463)||(7167049-7167174)
chr3 (359-465)||(18656256-18656363)
chr3 (338-463)||(2671752-2671876)
chr3 (338-441)||(40372986-40373085)
chr3 (337-463)||(8477170-8477295)
chr3 (338-465)||(28504020-28504145)
chr3 (338-442)||(8739254-8739354)
chr3 (338-442)||(9091492-9091592)
chr3 (359-442)||(8512037-8512122)
chr3 (359-442)||(8516917-8517002)
chr3 (359-442)||(2677266-2677351)
chr3 (359-442)||(2673110-2673195)
chr3 (359-442)||(10207755-10207840)
[»] chr2 (10 HSPs)
chr2 (359-465)||(44312777-44312885)
chr2 (336-463)||(11099093-11099219)
chr2 (359-465)||(32246607-32246716)
chr2 (359-465)||(39812141-39812250)
chr2 (338-463)||(14291295-14291419)
chr2 (338-463)||(9296567-9296691)
chr2 (359-442)||(19344243-19344327)
chr2 (359-442)||(19349101-19349185)
chr2 (338-463)||(25403443-25403565)
chr2 (338-463)||(25398305-25398427)
[»] chr1 (10 HSPs)
chr1 (359-465)||(25445244-25445352)
chr1 (359-465)||(39445322-39445430)
chr1 (359-465)||(44024027-44024135)
chr1 (359-437)||(41386571-41386650)
chr1 (359-442)||(41398060-41398144)
chr1 (359-465)||(1055166-1055274)
chr1 (377-442)||(43988644-43988709)
chr1 (374-435)||(24787564-24787624)
chr1 (338-463)||(24202932-24203054)
chr1 (338-394)||(19359079-19359132)
[»] scaffold0464 (1 HSPs)
scaffold0464 (359-465)||(185-293)
[»] scaffold0127 (1 HSPs)
scaffold0127 (359-437)||(34132-34211)
[»] scaffold0355 (2 HSPs)
scaffold0355 (359-442)||(9818-9902)
scaffold0355 (359-465)||(40-143)
[»] scaffold0978 (1 HSPs)
scaffold0978 (337-461)||(404-528)
[»] scaffold0479 (1 HSPs)
scaffold0479 (359-420)||(13171-13233)
[»] scaffold0197 (2 HSPs)
scaffold0197 (359-442)||(19343-19428)
scaffold0197 (359-433)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (359-442)||(149134-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (359-442)||(2429-2514)
[»] scaffold0188 (1 HSPs)
scaffold0188 (338-463)||(24208-24331)
[»] scaffold0087 (1 HSPs)
scaffold0087 (338-413)||(44174-44247)
[»] scaffold0009 (1 HSPs)
scaffold0009 (359-433)||(182152-182228)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 57 - 338
Target Start/End: Original strand, 38613476 - 38613757
Alignment:
Q  57 taattcttactaaatatttcacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac 156  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613476 taattcttactaaatattccacagagctcctttgctttgccaacaaattcaggaacttcatatctgaaggtgccgttccatctccttctttgttctctac 38613575  T
Q  157 ttttatttatttttctatctcgtagcaagtttggccatcatcatcatctctggtcccaggtttcaaaattatgagtaattttaaacttgatactcattgt 256  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38613576 ttttatttatttttctatctcgtaacaagtttggccatcatcatcttctctggtcccagctttcaaaattatgagtaattttaaacttgatactcattgt 38613675  T
Q  257 aatctccgttttcacctgcagggtcttaaatacattgcacaaacaccgttgccaaggtttgaatctgctgaattttgcttct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  38613676 aatctccgttttcacctgcagggtcttaaatacattgcacaaacaccgttgccaaggtttgaatcagctcgattttgcttct 38613757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 335 - 465
Target Start/End: Original strand, 6311097 - 6311229
Alignment:
Q  335 ttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 434  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6311097 ttctgttgtgaatccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca 6311196  T
Q  435 aacaaca--aaaccagccctagactagtgtata 465  Q
    |||||||  ||| ||||||||||||||||||||    
T  6311197 aacaacaacaaagcagccctagactagtgtata 6311229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 337 - 465
Target Start/End: Complemental strand, 7290211 - 7290080
Alignment:
Q  337 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 435  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||    
T  7290211 ctgttgtgaatccggttccaaactcacaccaatgaaataaacattgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaaacaa 7290112  T
Q  436 acaaca--aaaccagccctagactagtgtata 465  Q
    ||||||  ||| ||||||||||||||||||||    
T  7290111 acaacaacaaagcagccctagactagtgtata 7290080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 36979184 - 36979308
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  36979184 tgttgtgaatccggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 36979280  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||| ||||||||||||||||||    
T  36979281 acaacaaaaacagccctagactagtgta 36979308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 4760366 - 4760242
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| ||||||||||||||||| ||||||||  ||||| |||||||||||| || ||||||||||||||||||| | ||||||||||||||||  |    
T  4760366 tgttgtgaatccggttgaaactcacatcaatgaaa--aacaaagatgtgtggagctagagatagtggtaatcaatgagca-aaatggtttccaagcaaca 4760270  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||| ||||||||||||||||||    
T  4760269 acaacaaaaacagccctagactagtgta 4760242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 30655448 - 30655572
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| ||||||||||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  30655448 tgttgtgaatccggttgaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 30655543  T
Q  436 acaac-aaaaccagccctagactagtgta 463  Q
    ||||| |||| ||||||||||||||||||    
T  30655544 acaacaaaaaacagccctagactagtgta 30655572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38612154 - 38612218
Alignment:
Q  1 ccgttattattggtgttatctcttgtatttttcctgtttagaaaatgatctgatgttaattctta 65  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38612154 ccgttattattggtgttatctcttgtattttttctgtttagaaaatgatctgatgttaattctta 38612218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 39785086 - 39784977
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 455  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| || ||||  ||| ||||||||      
T  39785086 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaataacaacaaaacagccctaag 39784987  T
Q  456 ctagtgtata 465  Q
    ||||||||||    
T  39784986 ctagtgtata 39784977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 338 - 444
Target Start/End: Complemental strand, 18853457 - 18853356
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 437  Q
    |||||||| ||||||||||||||||||||| |||| |||    ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||    
T  18853457 tgttgtgaatccggttgaaactcacaccaacgaaacaaa----gatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaaac 18853363  T
Q  438 aacaaaa 444  Q
    |||||||    
T  18853362 aacaaaa 18853356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 338 - 457
Target Start/End: Complemental strand, 18870849 - 18870734
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 437  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| |||| |||||||| |||||   |||||||||||||||||||    
T  18870849 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagataatggtaatctatgag-ttaaatggtttccaagcaaac 18870754  T
Q  438 aacaaaaccagccctagact 457  Q
    |||||||   ||||||||||    
T  18870753 aacaaaaaacgccctagact 18870734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 25328540 - 25328456
Alignment:
Q  359 tcacaccaatgaaataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  25328540 tcacaacaatgaaataaatcaatgatgtgcggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaa 25328456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 463
Target Start/End: Complemental strand, 10689442 - 10689309
Alignment:
Q  329 ttttgcttctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttc 428  Q
    ||||| || ||||||| || ||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||| |||||  | |||||||||    
T  10689442 ttttgattgtgttgtgttttcggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatctatgag-tctaatggtttc 10689346  T
Q  429 caagca--aacaacaaaaccagccctagactagtgta 463  Q
    ||||||  |||||||||| || ||||||  |||||||    
T  10689345 caagcaacaacaacaaaaacaaccctagtgtagtgta 10689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 374 - 463
Target Start/End: Complemental strand, 33038063 - 33037972
Alignment:
Q  374 aaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--aacaacaa-aaccagccctagactagtgta 463  Q
    |||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |||||||| || ||||||||||||||||||    
T  33038063 aaacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaacaacaacaataaacagccctagactagtgta 33037972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 35745213 - 35745298
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  35745213 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 35745298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 433
Target Start/End: Complemental strand, 10684528 - 10684452
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 433  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  10684528 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 10684452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 336 - 412
Target Start/End: Complemental strand, 19752683 - 19752609
Alignment:
Q  336 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaat 412  Q
    |||||||||| ||||||  ||| |||||||||||||| |||||| ||||||||||||||  |  |||||||||||||    
T  19752683 tctgttgtgaatccggtaaaaa-tcacaccaatgaaa-aaacaaagatgtgtggagcaaaaggaagtggtaatcaat 19752609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 337 - 465
Target Start/End: Complemental strand, 1457446 - 1457315
Alignment:
Q  337 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 435  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  1457446 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 1457347  T
Q  436 acaaca--aaaccagccctagactagtgtata 465  Q
    ||||||  ||| ||||||||||||||||||||    
T  1457346 acaacaacaaagcagccctagactagtgtata 1457315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 338 - 465
Target Start/End: Original strand, 27444771 - 27444901
Alignment:
Q  338 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 436  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  27444771 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27444870  T
Q  437 caaca--aaaccagccctagactagtgtata 465  Q
    |||||  | | ||||||||||||||||||||    
T  27444871 caacaacatagcagccctagactagtgtata 27444901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 338 - 465
Target Start/End: Original strand, 43592080 - 43592210
Alignment:
Q  338 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 436  Q
    |||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  43592080 tgttgtgaatccggttccaaagtcacatcaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaa 43592179  T
Q  437 caaca--aaaccagccctagactagtgtata 465  Q
    |||||  ||| ||||||||||||||||||||    
T  43592180 caacaacaaagcagccctagactagtgtata 43592210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 338 - 465
Target Start/End: Original strand, 43598525 - 43598655
Alignment:
Q  338 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 436  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  43598525 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43598624  T
Q  437 caaca--aaaccagccctagactagtgtata 465  Q
    |||||  ||| ||||||||||||||||||||    
T  43598625 caacaacaaagcagccctagactagtgtata 43598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 338 - 465
Target Start/End: Original strand, 43604017 - 43604147
Alignment:
Q  338 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 436  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  43604017 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43604116  T
Q  437 caaca--aaaccagccctagactagtgtata 465  Q
    |||||  ||| ||||||||||||||||||||    
T  43604117 caacaacaaagcagccctagactagtgtata 43604147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 338 - 465
Target Start/End: Original strand, 43609509 - 43609639
Alignment:
Q  338 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 436  Q
    |||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  43609509 tgttgtgaatccggttccaaagtcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaaa 43609608  T
Q  437 caaca--aaaccagccctagactagtgtata 465  Q
    |||||  ||| ||||||||||||||||||||    
T  43609609 caacaacaaagcagccctagactagtgtata 43609639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 338 - 465
Target Start/End: Original strand, 27449615 - 27449745
Alignment:
Q  338 tgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaa 436  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  27449615 tgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatatgtggagcaagagatagtggtaatcaatgagtacaaatggtctccaagcaaa 27449714  T
Q  437 caaca--aaaccagccctagactagtgtata 465  Q
    |||||  | | ||||||||||||||||||||    
T  27449715 caacaacatagcagccctagactagtgtata 27449745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 355 - 465
Target Start/End: Original strand, 30631227 - 30631338
Alignment:
Q  355 aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--aacaacaaaaccagccct 452  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||  |||||||||| |||||||    
T  30631227 aaactcacacaaatgaaataaacaatgatgtgtggagcaagagatagtggtaatctatgagaacaaatggttttcaagcaacaacaacaaaa-cagccct 30631325  T
Q  453 agactagtgtata 465  Q
    |||||||||||||    
T  30631326 agactagtgtata 30631338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 28807837 - 28807729
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 456  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  28807837 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 28807738  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  28807737 tagtgtata 28807729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 15044512 - 15044618
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| | |||||||  ||| |||||||||||    
T  15044512 tcacaccaatgaaata--caatgacgtgtagagcaagtgatagtggtaatcaatgagaacaaatggtctccaaaccaacaacaacaaaacagccctagac 15044609  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  15044610 tagtgtata 15044618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 31180079 - 31180142
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtg 403  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||||||||||||| |||||||    
T  31180079 tgttgtgaatccggttgaaactcacaccaatgaa--taacaatgatgtgtggagcaagagatagtg 31180142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 37556887 - 37556802
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37556887 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37556802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 37561709 - 37561624
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| ||||| |||||| |||||||  ||||||| ||||||||    
T  37561709 tcacaccaatgataataaaccaaagatgtgtggagcaagtgatagtgataatctatgagagcaaatggcctccaagctaacaacaa 37561624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 38191983 - 38192105
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  38191983 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38192077  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||| ||||||||||||||||||    
T  38192078 acaacaaaaacagccctagactagtgta 38192105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 38219208 - 38219330
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  38219208 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 38219302  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||| ||||||||||||||||||    
T  38219303 acaacaaaaacagccctagactagtgta 38219330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 2785197 - 2785282
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  2785197 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 2785282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 31397256 - 31397171
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  31397256 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31397171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 31402113 - 31402028
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  31402113 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 31402028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 33791158 - 33791223
Alignment:
Q  377 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  33791158 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33791223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 394
Target Start/End: Original strand, 35387474 - 35387527
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 394  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  35387474 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 35387527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 33768021 - 33768086
Alignment:
Q  377 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||||||||| | ||||| |||||  ||||||   ||||||| ||||||||    
T  33768021 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatgacctccaagctaacaacaa 33768086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 337 - 465
Target Start/End: Original strand, 51520257 - 51520388
Alignment:
Q  337 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 435  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  51520257 ctgttgtgaatccggttccaaactcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaa 51520356  T
Q  436 acaaca--aaaccagccctagactagtgtata 465  Q
    ||||||  ||| ||||||||||||||||||||    
T  51520357 acaacaacaaagcagccctagactagtgtata 51520388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 9224668 - 9224560
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  9224668 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9224569  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  9224568 tagtgtata 9224560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 9229455 - 9229347
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  9229455 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 9229356  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  9229355 tagtgtata 9229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 337 - 465
Target Start/End: Complemental strand, 56146996 - 56146865
Alignment:
Q  337 ctgttgtgattccggttg-aaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 435  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  56146996 ctgttgtgaatccggttccaaattcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaattggtctccaagcaa 56146897  T
Q  436 acaaca--aaaccagccctagactagtgtata 465  Q
    ||||||  ||| ||||||||||||||||||||    
T  56146896 acaacaacaaagcagccctagactagtgtata 56146865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 359 - 464
Target Start/End: Original strand, 3813846 - 3813954
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 455  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||| ||| ||||||    
T  3813846 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatcaatgagagcaaatggtctccaagcaaacaacaacaaaacagtcctaga 3813945  T
Q  456 ctagtgtat 464  Q
    |||||||||    
T  3813946 ctagtgtat 3813954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 18855549 - 18855657
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 456  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  18855549 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 18855648  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  18855649 tagtgtata 18855657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 359 - 463
Target Start/End: Complemental strand, 45348079 - 45347973
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||  ||| ||| |||||||    
T  45348079 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45347980  T
Q  457 tagtgta 463  Q
    |||||||    
T  45347979 tagtgta 45347973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 359 - 463
Target Start/End: Complemental strand, 45357558 - 45357452
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||||  ||| ||| |||||||    
T  45357558 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtcttcaagctaacaacaacaaaacagtcctagac 45357459  T
Q  457 tagtgta 463  Q
    |||||||    
T  45357458 tagtgta 45357452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 24741748 - 24741871
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| ||||||||||||||||||||||||||   |||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||  |    
T  24741748 tgttgtgaatccggttgaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaaca 24741843  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||| ||||||||||||||||||    
T  24741844 acaacaaaaacagccctagactagtgta 24741871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 5732486 - 5732593
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  ||| ||||||||  |    
T  5732486 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagccctaagc 5732584  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  5732585 tagtgtata 5732593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 29760449 - 29760572
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||| | |  ||||||||||||||||  |    
T  29760449 tgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatcaat-aaacaaaatggtttccaagcaaca 29760545  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||| || |||||||||||||||    
T  29760546 acaacaaaa-caaccctagactagtgta 29760572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 35323 - 35215
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  35323 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 35224  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  35223 tagtgtata 35215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 12396735 - 12396843
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  12396735 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12396834  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  12396835 tagtgtata 12396843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 12406155 - 12406263
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  12406155 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagcagccctagac 12406254  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  12406255 tagtgtata 12406263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 24024589 - 24024506
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24024589 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaa 24024506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 4866553 - 4866661
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||  ||| ||| |||||||    
T  4866553 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgaggacaaatggtctccaagcaaacaacaacaaaacagtcctagac 4866652  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  4866653 tagtgtata 4866661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 31109844 - 31109737
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| |||||||  ||| |||||||| ||    
T  31109844 tcacaccaatgaaataaacaatgatgtgtgcagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagcccta-ac 31109746  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  31109745 tagtgtata 31109737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 2057763 - 2057866
Alignment:
Q  336 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 435  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||    
T  2057763 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgag-tcaaatggtttccaagcaa 2057859  T
Q  436 acaacaa 442  Q
    |||||||    
T  2057860 acaacaa 2057866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 20357837 - 20357713
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc---a 434  Q
    |||||||| ||||||||||||||||||||||||   |||||| ||||||||||||||| ||||||||||||| |||||  |||||||| |||||||        
T  20357837 tgttgtgaatccggttgaaactcacaccaatga---aaacaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagctaac 20357742  T
Q  435 aacaacaaaaccagccctagactagtgta 463  Q
    |||||||||| ||||||||||||||||||    
T  20357741 aacaacaaaaacagccctagactagtgta 20357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 19992135 - 19992243
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 456  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||  ||||||| || ||||||||  |    
T  19992135 tcacaccaatgaaataaaccaaagatgtgtggagcaggtgatagtgataatcaatgagaacaaatggcttccaagcttacaacaacaaacagccctaagc 19992234  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  19992235 tagtgtata 19992243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 21812501 - 21812393
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 456  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| ||||||| |||||||| |||||||| || ||||||||  |    
T  21812501 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcttccaagctaacaacaacaaacagccctaagc 21812402  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  21812401 tagtgtata 21812393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 1533730 - 1533608
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| ||||||| ||||||||||||||||||   |||| ||||||||||||||   |||||||||||||||||||| |||  |||||||||||  |    
T  1533730 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaagatgtgtggagcaaaatatagtggtaatcaatgagaaaaaa--gtttccaagcaaca 1533636  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    |||||||||||||||| || ||||||||    
T  1533635 acaacaaaaccagccccagtctagtgta 1533608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 21645818 - 21645940
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| |||||   |||  || ||||||||  |    
T  21645818 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaaaagggagtggtaatctatgag--taaagtgtctccaagcaaca 21645912  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||| ||||||||| ||||||||    
T  21645913 acaacaaaaacagccctagtctagtgta 21645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 2479148 - 2479221
Alignment:
Q  338 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 413  Q
    |||||||| |||||||||| | |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||    
T  2479148 tgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgtgtggagcaaagga-agtggtaatcaatg 2479221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 413
Target Start/End: Original strand, 47263485 - 47263562
Alignment:
Q  334 cttctgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 413  Q
    |||||||||||| |||||||||| | |||||||||||||  |||||| |||| |||||||||  || ||||||||||||||    
T  47263485 cttctgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgcgtggagcaaagga-agtggtaatcaatg 47263562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 433
Target Start/End: Original strand, 16879894 - 16879970
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 433  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  16879894 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16879970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 433
Target Start/End: Original strand, 16884750 - 16884826
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 433  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  16884750 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 16884826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 433
Target Start/End: Complemental strand, 24261587 - 24261511
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 433  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  24261587 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24261511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 433
Target Start/End: Complemental strand, 24266466 - 24266390
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 433  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  24266466 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 24266390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 11856795 - 11856903
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  11856795 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 11856894  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  11856895 tagtgtata 11856903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 14737838 - 14737730
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  14737838 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 14737739  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  14737738 tagtgtata 14737730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 14742697 - 14742589
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||  ||| |||||||||||    
T  14742697 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcatacaacaacaaaacagccctagac 14742598  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  14742597 tagtgtata 14742589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 22010958 - 22010850
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| | |||||||||    
T  22010958 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgccctagac 22010859  T
Q  457 tagtgtata 465  Q
     ||||||||    
T  22010858 aagtgtata 22010850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 6438324 - 6438431
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagact 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||  ||    
T  6438324 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaaccaatggcttccaagcaaacaacaacaaacagccctaagct 6438423  T
Q  458 agtgtata 465  Q
    ||||||||    
T  6438424 agtgtata 6438431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 28184325 - 28184436
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaac--aaatggtttccaagcaaacaaca--aaaccagcccta 453  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||  ||| ||||||||    
T  28184325 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaaaatggtctccaagcaaacaacaacaaaacagcccta 28184424  T
Q  454 gactagtgtata 465  Q
    ||||||||||||    
T  28184425 gactagtgtata 28184436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 28155832 - 28155749
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | ||||| ||||||||    
T  28155832 tcacaccaatgcaataaacaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtcttcaagctaacaacaa 28155749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 5675057 - 5674934
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  ||||||||||||||| ||| | ||| | || |||||||  |    
T  5675057 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagatagtggtaatcaaagagta-aaaagtttcccaagcaaca 5674962  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||||||||||||| ||||||||    
T  5674961 acaacaaaaccagccctagtctagtgta 5674934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 30126084 - 30125960
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa-- 435  Q
    |||||||| ||||||||||| ||||||||||||   |||||| ||||||||||||||| | ||||| ||||| |||||  |||||||| ||||||| |      
T  30126084 tgttgtgaatccggttgaaaatcacaccaatga---aaacaaagatgtgtggagcaagaggtagtgataatctatgag-ccaaatggtctccaagctaac 30125989  T
Q  436 -acaacaaaaccagccctagactagtgta 463  Q
     ||||||||| ||||||||||||||||||    
T  30125988 tacaacaaaaacagccctagactagtgta 30125960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 6005239 - 6005324
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  6005239 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 6005324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 442
Target Start/End: Original strand, 5343322 - 5343387
Alignment:
Q  377 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  5343322 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 5343387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 33330690 - 33330625
Alignment:
Q  377 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  33330690 caatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 33330625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 33336207 - 33336122
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||| | ||||||||    
T  33336207 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaaactaacaacaa 33336122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 16838566 - 16838651
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||| | ||||| |||||  |||||||  | ||||| ||||||||    
T  16838566 tcacaccaatgagaataaaccaatgatatgtggagcaagtgatagagataatctatgagtgcaaatggccttcaagctaacaacaa 16838651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 338 - 413
Target Start/End: Original strand, 31936398 - 31936470
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 413  Q
    |||||||| ||||||| ||| ||||||||||||||  ||||| ||||||||||||||  |  ||||||||||||||    
T  31936398 tgttgtgaatccggttaaaa-tcacaccaatgaaa--aacaaagatgtgtggagcaaaaggaagtggtaatcaatg 31936470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 22173456 - 22173348
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||    
T  22173456 tcacaccaatgaaataaacaatgatgtgtggagcaagagatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaaacagccctagac 22173357  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  22173356 tagtgtata 22173348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 336 - 463
Target Start/End: Original strand, 7167049 - 7167174
Alignment:
Q  336 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca- 434  Q
    |||||||||| |||||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||     
T  7167049 tctgttgtgaatccggttgaaactcacaccaatgaa--aaacaaagatgtgtggagcaagagatagtggtaatctatgagca-aaatggtttccaagcaa 7167145  T
Q  435 -aacaacaaaaccagccctagactagtgta 463  Q
     |||||||||| ||||||||||||||||||    
T  7167146 caacaacaaaa-cagccctagactagtgta 7167174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 18656256 - 18656363
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  ||| ||||||||  |    
T  18656256 tcacaccaatgaaa-atacaatgatgtgtggagcaagtgatggtggtaatcaatgagaacaaatggtctccaagctaacaacaacaaaacagccctaagc 18656354  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  18656355 tagtgtata 18656363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 2671876 - 2671752
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--- 434  Q
    |||||||| ||||||| ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| |||||  |||||||| ||||||||       
T  2671876 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgag-ccaaatggtctccaagcaaac 2671781  T
Q  435 aacaacaaaaccagccctagactagtgta 463  Q
    |||||||||| ||||||||| ||||||||    
T  2671780 aacaacaaaaacagccctagtctagtgta 2671752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 338 - 441
Target Start/End: Complemental strand, 40373085 - 40372986
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 437  Q
    |||||||| ||||||| ||||||||||||||||||   |||| | ||||||||||||| ||||||||||||||||| | | |||||||||||||||||||    
T  40373085 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 40372990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 337 - 463
Target Start/End: Original strand, 8477170 - 8477295
Alignment:
Q  337 ctgttgtgattccggt-tgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 435  Q
    ||||||||| |||||| | ||||||||||||||||||   |||| ||||||||||||||  ||||||||||||||| ||| | ||| | || ||||||||    
T  8477170 ctgttgtgaatccggtataaaactcacaccaatgaaa---acaaagatgtgtggagcaaaagatagtggtaatcaaagagtaaaaa-gtttcccaagcaa 8477265  T
Q  436 --acaacaaaaccagccctagactagtgta 463  Q
      ||||||||||||||||||||||||||||    
T  8477266 caacaacaaaaccagccctagactagtgta 8477295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 465
Target Start/End: Complemental strand, 28504145 - 28504020
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| ||||||   ||||||||||||||||   ||||||||||||||||||||  | ||||| ||||| ||||||| ||||||||||||||||  |    
T  28504145 tgttgtgaatccggtcttaactcacaccaatgaat--aacaatgatgtgtggagcaaaaggtagtgataatctatgagaa-aaatggtttccaagcaaca 28504049  T
Q  436 acaacaaaaccagccctagactagtgtata 465  Q
    ||||||||| ||||||| ||||||||||||    
T  28504048 acaacaaaa-cagcccttgactagtgtata 28504020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 8739354 - 8739254
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 437  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  8739354 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 8739259  T
Q  438 aacaa 442  Q
    |||||    
T  8739258 aacaa 8739254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 9091592 - 9091492
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 437  Q
    |||||||| | ||||||| ||||||||||||||||   |||| |||||||||||||||  |||||||||||| |||||  |||||||||||||||||||     
T  9091592 tgttgtgaattcggttgagactcacaccaatgaaa---acaaagatgtgtggagcaagaaatagtggtaatctatgag-tcaaatggtttccaagcaaat 9091497  T
Q  438 aacaa 442  Q
    |||||    
T  9091496 aacaa 9091492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 8512037 - 8512122
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  8512037 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8512122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 8516917 - 8517002
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  8516917 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 8517002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 2677351 - 2677266
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||| |||||||  ||||||| ||||||||    
T  2677351 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcctccaagctaacaacaa 2677266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 2673195 - 2673110
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||||  ||||||  ||||||| ||||||||    
T  2673195 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagagtaaatggcctccaagctaacaacaa 2673110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 10207755 - 10207840
Alignment:
Q  359 tcacaccaatga-aataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  10207755 tcacaccaatgagaataaaccaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 10207840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 44312885 - 44312777
Alignment:
Q  359 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctagac 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||| | |||||||||    
T  44312885 tcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtctccaagcaaacaacaacaaagccgccctagac 44312786  T
Q  457 tagtgtata 465  Q
     ||||||||    
T  44312785 aagtgtata 44312777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 336 - 463
Target Start/End: Complemental strand, 11099219 - 11099093
Alignment:
Q  336 tctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca- 434  Q
    |||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||     
T  11099219 tctgttgtgaatccggttgaaactcacaccaatgaaa--aacaaagatgtgtggagcaagagatagtggtaatcaatga-acaaaatggtttccaagcaa 11099123  T
Q  435 -aacaacaaaaccagccctagactagtgta 463  Q
     |||||||||| ||||||||||||||||||    
T  11099122 caacaacaaaaacagccctagactagtgta 11099093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 32246607 - 32246716
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 455  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||  ||| ||| ||||||    
T  32246607 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtggtaatctatgagaacaaatggtctccaagctaacaacaacaaaacagtcctaga 32246706  T
Q  456 ctagtgtata 465  Q
    ||||||||||    
T  32246707 ctagtgtata 32246716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 39812250 - 39812141
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 455  Q
    ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||  ||| ||||||||      
T  39812250 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagccaacaacaacaaaacagccctaag 39812151  T
Q  456 ctagtgtata 465  Q
    ||||||||||    
T  39812150 ctagtgtata 39812141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 14291295 - 14291419
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--- 434  Q
    |||||||| ||||||| ||||||||||||||||||   |||| | ||||||||||||| ||||||||||||||||| | | ||||||||||||||||       
T  14291295 tgttgtgaatccggttaaaactcacaccaatgaaa---acaaaggtgtgtggagcaagagatagtggtaatcaatgggca-aaatggtttccaagcaaac 14291390  T
Q  435 aacaacaaaaccagccctagactagtgta 463  Q
    |||||||||| ||||||||||||| ||||    
T  14291391 aacaacaaaaacagccctagactaatgta 14291419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 9296691 - 9296567
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--- 434  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  | ||||||||||| ||||| | ||||||||||||||||       
T  9296691 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaaggtagtggtaatctatgagca-aaatggtttccaagcaaac 9296596  T
Q  435 aacaacaaaaccagccctagactagtgta 463  Q
    |||||||||| ||||||||| ||||||||    
T  9296595 aacaacaaaaacagccctagtctagtgta 9296567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 19344243 - 19344327
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| |||||||  ||||||| ||||||||    
T  19344243 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19344327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 19349101 - 19349185
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||| |||||||  ||||||| ||||||||    
T  19349101 tcacaccaatgaaataaaccaaagatgtgtggagcaagagatagtggtaatctatgagagcaaatggcctccaagctaacaacaa 19349185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 25403443 - 25403565
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| |||||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  25403443 tgttgtgaatccggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25403537  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||| ||||||||||||||||||    
T  25403538 acaacaaaaacagccctagactagtgta 25403565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 463
Target Start/End: Original strand, 25398305 - 25398427
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| || ||||||||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  25398305 tgttgtgaatctggttgaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 25398399  T
Q  436 acaacaaaaccagccctagactagtgta 463  Q
    ||||||||| ||||||||||||||||||    
T  25398400 acaacaaaaacagccctagactagtgta 25398427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 25445352 - 25445244
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 456  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  25445352 tcacaccaatgaaataaaccaatgatgtgtggagcaagcgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 25445253  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  25445252 tagtgtata 25445244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 39445322 - 39445430
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 456  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||| || ||||||||  |    
T  39445322 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatggcttccaagcaaacaacaacaaacagccctaagc 39445421  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  39445422 tagtgtata 39445430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 44024135 - 44024027
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 456  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  44024135 tcacaccaatgaaataaaccaatgatgtgtggagcaactgatagtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 44024036  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  44024035 tagtgtata 44024027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 41386571 - 41386650
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 437  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  41386571 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 41386650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 41398060 - 41398144
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  41398060 tcacaccaatgaaataaaccaattatgtgtggagcaagtgatagtgataatcaatgagaacatatggtctccaagcaaacaacaa 41398144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 1055274 - 1055166
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 456  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||  ||||||| || ||||||||  |    
T  1055274 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgtgaacaaatgtcttccaagcttacaacaacaaacagccctaagc 1055175  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  1055174 tagtgtata 1055166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 442
Target Start/End: Complemental strand, 43988709 - 43988644
Alignment:
Q  377 caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||| ||||||||    
T  43988709 caatgatgtgtggagcaagtgatagagataatctatgagagcaaatggcttccaagctaacaacaa 43988644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 24787624 - 24787564
Alignment:
Q  374 aaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaa 435  Q
    |||||| ||||||||||||||| |||||||||||| |||||| | |||||||||||||||||    
T  24787624 aaacaaagatgtgtggagcaagagatagtggtaataaatgagca-aaatggtttccaagcaa 24787564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 24203054 - 24202932
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 437  Q
    |||||||| ||||||| ||||||||||||||||   |||||| ||||||||||||||  |  |||||||||| ||| |   |||  || |||||||||||    
T  24203054 tgttgtgaatccggttaaaactcacaccaatga---aaacaaagatgtgtggagcaaaagggagtggtaatctatgtg--taaagtgtctccaagcaaac 24202960  T
Q  438 aaca--aaaccagccctagactagtgta 463  Q
    ||||  ||| |||||||| |||||||||    
T  24202959 aacaacaaaacagccctaaactagtgta 24202932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 19359132 - 19359079
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaa 394  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||    
T  19359132 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaa 19359079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 359 - 465
Target Start/End: Original strand, 185 - 293
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa-aaccagccctagac 456  Q
    ||||||||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||||||||  |    
T  185 tcacaccaatgaaataaaccaaagatgtgtggagcaagtgatggtgataatcaatgagaacaaatggcttccaagcaaacaacaacaaacagccctaagc 284  T
Q  457 tagtgtata 465  Q
    |||||||||    
T  285 tagtgtata 293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 359 - 437
Target Start/End: Complemental strand, 34211 - 34132
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaac 437  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  34211 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagaacaaatggtctccaagcaaac 34132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 9902 - 9818
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||||||    
T  9902 tcacaccaatgaaataaaccaatgatgtgtggagcaagtgatagtgataatcaatgagagcaaatggtctccaaccaaacaacaa 9818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 465
Target Start/End: Complemental strand, 143 - 40
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaaca--aaaccagccctaga 455  Q
    |||||||||| |||||||| |||||||||||||||||||||      |||||||||||| |||||||| |||||| ||||||||  ||| ||||||||      
T  143 tcacaccaattaaataaaccaatgatgtgtggagcaagtga------taatcaatgagagcaaatggtctccaagtaaacaacaacaaaacagccctaag 50  T
Q  456 ctagtgtata 465  Q
    ||||||||||    
T  49 ctagtgtata 40  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 337 - 461
Target Start/End: Complemental strand, 528 - 404
Alignment:
Q  337 ctgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca-- 434  Q
    ||||||||| |||  || ||||||||||||||||||   |||| ||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||      
T  528 ctgttgtgaatccatttaaaactcacaccaatgaaa---acaaagatgtgtggagcaagagatagtggtaatctatgagcaaaaatggtttccaagcaac 432  T
Q  435 aacaac-aaaaccagccctagactagtg 461  Q
    |||||| |||| |||||||| |||||||    
T  431 aacaacaaaaaacagccctaaactagtg 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 13171 - 13233
Alignment:
Q  359 tcacaccaatgaaataaac-aatgatgtgtggagcaagtgatagtggtaatcaatgagaacaa 420  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||    
T  13171 tcacaccaatgaaataaaccaaagatatgtggagcaagtgatagtgataatcaatgagaacaa 13233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 19428 - 19343
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  19428 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 19343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 433
Target Start/End: Complemental strand, 14573 - 14497
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 433  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  14573 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 14497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 149219 - 149134
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| |||||| ||||||||||||||||||||||||| | ||||| |||||  |||||||  ||||||| ||||||||    
T  149219 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgatagagataatctatgagtgcaaatggcctccaagctaacaacaa 149134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 442
Target Start/End: Complemental strand, 2514 - 2429
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagcaaacaacaa 442  Q
    |||||||||||| |||||| ||||||||||||||||||||||||  | ||||| |||||  |||||||  ||||||| ||||||||    
T  2514 tcacaccaatgagaataaatcaatgatgtgtggagcaagtgataaagataatccatgagtgcaaatggcctccaagctaacaacaa 2429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 463
Target Start/End: Complemental strand, 24331 - 24208
Alignment:
Q  338 tgttgtgattccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagca--a 435  Q
    |||||||| ||||||| |||||||||||||||   ||||||| ||||||||||||||  |  |||||||||| ||| |   |||  || ||||||||  |    
T  24331 tgttgtgaatccggttaaaactcacaccaatg---taaacaaagatgtgtggagcaaaaggaagtggtaatctatgtg--taaagtgtctccaagcaaca 24237  T
Q  436 acaac-aaaaccagccctagactagtgta 463  Q
    ||||| |||||||||||||||||||||||    
T  24236 acaacaaaaaccagccctagactagtgta 24208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 44247 - 44174
Alignment:
Q  338 tgttgtga-ttccggttgaaactcacaccaatgaaataaacaatgatgtgtggagcaagtgatagtggtaatcaatg 413  Q
    |||||||| |||||||||| | |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||    
T  44247 tgttgtgagttccggttgataatcacaccaatgaa--aaacaaagatgtgtggagcaaagga-agtggtaatcaatg 44174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 433
Target Start/End: Complemental strand, 182228 - 182152
Alignment:
Q  359 tcacaccaatga-aataaa-caatgatgtgtggagcaagtgatagtggtaatcaatgagaacaaatggtttccaagc 433  Q
    |||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||| |||||  |||||||  |||||||    
T  182228 tcacaccaatgagaataaatcaaagatgtgtggagcaagagatagaggtaatctatgagtgcaaatggcctccaagc 182152  T

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