View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12878_low_5 (Length: 415)
Name: NF12878_low_5
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Original strand, 54718617 - 54719000
Alignment:
| Q |
11 |
agaacctgtggaggttgaaaatggtgaggttgagcgacaccgtggagagatccggagaaaccgttgaagagagcttgaacggaagcgtcaccagcagcct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54718617 |
agaacctgtggaggttgaaaatggtgaggttgagcgacaccgtggagagatccggagaaaccgttgaagagagcttgaacggaagcatcaccagcagcct |
54718716 |
T |
|
| Q |
111 |
gtaaaagctaacaatattaaaatattcggtaataaaaacgataaagttgttaattaataaacggagtgagaaaatatgaatatactcacggaggaggtgt |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54718717 |
gtaaaagctaacaatattaaaatattcagtaataaaaacgataaagttgttaattaataaacggagtgagaaaatatgaatatactcacggaggaggtgt |
54718816 |
T |
|
| Q |
211 |
taacgacgtcgttttgggaggagtcaaagtcagcaggcatgtggaggagacctccggaatcggcggtgagaagcatgagagcggcggcggttttgtcagt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54718817 |
taacgacgtcgttttgggaggagtcaaagtcagcaggcatgtggaggagacctccggaatcggcggtgagaagcatgagagcggcggcggttttgtcagt |
54718916 |
T |
|
| Q |
311 |
gatctggtggttacgaaacttagaggcaaggttgttgtgttgttcatcgtaattagggaaagtaacattttcgtcggaattggg |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54718917 |
gatctggtggttacgaaacttagaggcaaggttgttgtgttgttcatcgtaattagggaaagtgacattttcgtcggaattggg |
54719000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University