View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12878_low_9 (Length: 396)
Name: NF12878_low_9
Description: NF12878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12878_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 39661851 - 39661515
Alignment:
| Q |
1 |
tatgaccagcttccattgtgatgcaatgactacttgagttagatagatttatagatatatctggaagatgtataagatgatgcaaaactaaggctcaaaa |
100 |
Q |
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| T |
39661851 |
tatgaccagcttccattgtgatgcaatgactacttgagttagatagatttatagatatatctggaagatgtataagatgatgcaaaactaaggctcaaaa |
39661752 |
T |
|
| Q |
101 |
tagggagaaattaataaaaagaagacagtactgtatgcttctggattttctattttcaatgtatttgtgtgtgttttagtgtaatgtatttatggagctt |
200 |
Q |
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| T |
39661751 |
tagggagaaattaataaaaagaagacagtactgtatgcttctggattttctattttcaatgtatttgtgtgtgttttagtgtaatgtatttatggagctt |
39661652 |
T |
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| Q |
201 |
ttaaagttgttgaaaaatcagaagccatgtttggaaaaagctcatatcagcaatattatcagcttcttcttcctctacctcgtggagtcagatatctttt |
300 |
Q |
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| T |
39661651 |
ttaaagttgttgaaaaatcagaagccatgtttggaaaaagctcatatcagcaatattatcagcttcttcttcctctacctcgtggagtcagatatctttt |
39661552 |
T |
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| Q |
301 |
ggcgtttcaaattgaatgactgaaaacaatttcttgg |
337 |
Q |
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| T |
39661551 |
ggcgtttcaaattgaatgactgaaaacaatttcttgg |
39661515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 44454291 - 44454254
Alignment:
| Q |
186 |
gtatttatggagcttttaaagttgttgaaaaatcagaa |
223 |
Q |
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| T |
44454291 |
gtatttatggcgcttttaaagttgttgaaaattcagaa |
44454254 |
T |
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