View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_high_10 (Length: 368)
Name: NF12879_high_10
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 49008726 - 49009076
Alignment:
| Q |
1 |
acacaagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcc |
100 |
Q |
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| T |
49008726 |
acacaagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcc |
49008825 |
T |
|
| Q |
101 |
caaacaagttggtgtttaaggagaaaaatgaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatct |
200 |
Q |
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| T |
49008826 |
caaacaagttggtgtttaaggagaaaaatgaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtttttgggtatct |
49008925 |
T |
|
| Q |
201 |
cacttggacagactcgaaacacaatgtcagaagtcccattgttgtgactagcctcaactcagaattaacacccccatagagcttaaagtgtttccttgaa |
300 |
Q |
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| T |
49008926 |
cacttggacagactcgaaacacaatgtcagaagtcccattgttgtgactagcctcaactcagaattaacacccccatagagcttaaagtgtttccttgaa |
49009025 |
T |
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| Q |
301 |
tattaatgattgcttaggttaagatgaggatattatgcttctaccaatcct |
351 |
Q |
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| T |
49009026 |
tattaatgattgcttaggttaagatgaggatattatgcttctaccaatcct |
49009076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 9947920 - 9947862
Alignment:
| Q |
58 |
gccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtt |
116 |
Q |
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| T |
9947920 |
gccaacattactcctatcaaagggtttcatgtcagtgttatcccaaacaagttggtgtt |
9947862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 8958637 - 8958694
Alignment:
| Q |
74 |
ttgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
131 |
Q |
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| T |
8958637 |
ttgaagggttccatgtcagtgttatcccaaacaagttggtattcaatgagaagaatga |
8958694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 8945503 - 8945391
Alignment:
| Q |
4 |
caagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaa |
103 |
Q |
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| T |
8945503 |
caagaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctagcattatgcctgttgaaggataccgtgttagtgctatcccaa |
8945404 |
T |
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| Q |
104 |
acaagttggtgtt |
116 |
Q |
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| T |
8945403 |
ataagttgatgtt |
8945391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 8975049 - 8975089
Alignment:
| Q |
76 |
gaagggttccatgttagtgttatcccaaacaagttggtgtt |
116 |
Q |
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| T |
8975049 |
gaagggttccatgttagagttatcccaaataagttggtgtt |
8975089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 25927991 - 25927947
Alignment:
| Q |
87 |
tgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
131 |
Q |
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| T |
25927991 |
tgttagtgttatcccaaacaagttagtgtttaatgagaagaatga |
25927947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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