View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_high_11 (Length: 356)
Name: NF12879_high_11
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 3 - 350
Target Start/End: Complemental strand, 193946 - 193599
Alignment:
| Q |
3 |
cctttaatctcattcatctctcgtaatttgttaattaatttccgtgaatgatcagatgatatatatataataatctgagtggcatgtatgtactataata |
102 |
Q |
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| T |
193946 |
cctttaatctcattcatctctcttaatttgttaattaatttccttgaatgatcagatgatatatatataataatctgagtggcatgtatgtactataata |
193847 |
T |
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| Q |
103 |
aagaatgttaggttgcaatctggatcaattggtgcactagaaagtcactatatctttatatatacgcatttggacttgtaggtatatgtacctacctcac |
202 |
Q |
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| T |
193846 |
aagaatgttaggttgcaatctggatcaattggtgcactagaaagtcactatatccttatatatacgcatttggacttgtaggtatatgtacctacctcac |
193747 |
T |
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| Q |
203 |
cccaatttgaggtataattaaactgatgaatgttgattgcagtttttagtacaaggtttgccatatttagcagataattgagcatatggggaataccaca |
302 |
Q |
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| T |
193746 |
cccaatttgaggtataattaaactgatgaatgttgattgcagtttttagtacaaggtttgccatctttagcagataattgagcatacggggaataccaca |
193647 |
T |
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| Q |
303 |
aaaatacaaataatatagcatatatatagttttcaatattcatctcac |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
193646 |
aaaatacaaataatatagcatatatatagttttcaatattcatttcac |
193599 |
T |
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