View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12879_high_2 (Length: 751)
Name: NF12879_high_2
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 20 - 584
Target Start/End: Complemental strand, 26841316 - 26840733
Alignment:
| Q |
20 |
tgttgaaggtagatatgatgttcaacattgaacgtttatacggtttcctcacctacatgtcagtaagttctaatactttcatattttccaatgatatgat |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26841316 |
tgttgaaggtagatatgacgttcaacattgaacgtttatacggtttcctcacctacatgtctgtaagttctaatactttcatattttccaatgatatgat |
26841217 |
T |
|
| Q |
120 |
aatccactcaattcttgatgtggctgacatacttggcttttcaattattgggttacaact---------tttgatgcccccatccctcccacgggattcc |
210 |
Q |
| |
|
||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26841216 |
aatacactcaattcttgatgtggctgccatacttggcttttcaattattggtttacaactcctacaacttttgatgcccccatccctcccacgggattcc |
26841117 |
T |
|
| Q |
211 |
atttttcaaagtccatttccaactaggccgcgtttatg--------atataatattgagtcttcaggagatgttacagatgtagagcacaacgccttc-- |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26841116 |
atttttcaaagtccatttccaactaggccgcatttatgcaaaatatatataatattgagtcttcaggagatgttacagatgtagagcacaacgccttctt |
26841017 |
T |
|
| Q |
301 |
-atgttgtgttagttcaacaagttttttagttagtattggttatatggttatcgttcaatagttgtcttgttttaagtcgaaaagaacatagatttgggt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
26841016 |
catgttgtgttagttcaacaagttttttagttagtattggttatatggttatcgttaagtagttgccttgttttaagtcgaaaagaacatagctttgggt |
26840917 |
T |
|
| Q |
400 |
tcttttatttcttctctttatggtttcttatacaccattatggatcgactaaagaaaggtatagacataaaacacattagtggactcatttagttcctcc |
499 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
26840916 |
tcttt-atttcttctctttatggtttcttatacaccattatggatcaactaaagaaaggtatagacataaagcacattagtggactcatttagttcctcc |
26840818 |
T |
|
| Q |
500 |
aatttcggtggaaggtttgtttgtctcaaaggtgtggttatcctattgtcgacgtcgtagttagttgttttttgtgggcgtgtgt |
584 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26840817 |
aatttcggtggaaggttcgtttgtctcaaaggtgtggttgtcctattgtcaacgtcgtagttagttgttttttgtgggcgtgtgt |
26840733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 619 - 742
Target Start/End: Complemental strand, 26840189 - 26840066
Alignment:
| Q |
619 |
gagttttattgtatggttgggattcggatacgcaagggtaagtagagacctctctcccgccaccgaaccaactatccttcctgcacgaaggatgagaata |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26840189 |
gagttttattgtatggttgggattcggatacgcaagggtcagtagagacctctctcccgccaccgaaccaactatccttcctgcacgaaggatgagaata |
26840090 |
T |
|
| Q |
719 |
atgaaccccttctctatctctgct |
742 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26840089 |
atgaaccccttctctatctctgct |
26840066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University