View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12879_high_23 (Length: 288)

Name: NF12879_high_23
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12879_high_23
NF12879_high_23
[»] chr4 (11 HSPs)
chr4 (192-263)||(38846976-38847047)
chr4 (167-256)||(12797277-12797366)
chr4 (167-256)||(23292925-23293014)
chr4 (166-256)||(28964186-28964276)
chr4 (207-256)||(16073425-16073474)
chr4 (207-256)||(21945534-21945583)
chr4 (207-256)||(29205475-29205524)
chr4 (207-247)||(4157189-4157229)
chr4 (207-247)||(4157476-4157516)
chr4 (167-239)||(5414100-5414172)
chr4 (168-248)||(34306744-34306824)
[»] chr6 (7 HSPs)
chr6 (203-288)||(4877942-4878027)
chr6 (168-256)||(34595165-34595253)
chr6 (167-256)||(28152129-28152218)
chr6 (207-248)||(32978878-32978919)
chr6 (207-288)||(24645480-24645561)
chr6 (168-256)||(28715326-28715414)
chr6 (208-256)||(32511646-32511694)
[»] chr3 (2 HSPs)
chr3 (168-256)||(20503496-20503584)
chr3 (207-256)||(26492184-26492233)
[»] chr2 (4 HSPs)
chr2 (165-248)||(18840950-18841033)
chr2 (170-256)||(2438661-2438747)
chr2 (168-256)||(15972904-15972992)
chr2 (207-256)||(30404829-30404878)
[»] scaffold0083 (1 HSPs)
scaffold0083 (207-256)||(45509-45558)
[»] chr7 (1 HSPs)
chr7 (207-256)||(21880183-21880232)
[»] scaffold0053 (1 HSPs)
scaffold0053 (207-263)||(8822-8878)
[»] chr5 (4 HSPs)
chr5 (168-256)||(21576685-21576773)
chr5 (170-256)||(30502330-30502416)
chr5 (170-256)||(30542673-30542759)
chr5 (227-263)||(15382503-15382539)
[»] scaffold0652 (1 HSPs)
scaffold0652 (169-256)||(403-490)
[»] chr8 (1 HSPs)
chr8 (207-256)||(3025582-3025631)
[»] chr1 (4 HSPs)
chr1 (207-256)||(1815288-1815337)
chr1 (168-256)||(18337360-18337448)
chr1 (207-251)||(21530725-21530769)
chr1 (207-263)||(46348362-46348418)
[»] scaffold0697 (1 HSPs)
scaffold0697 (207-251)||(1680-1724)


Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 38846976 - 38847047
Alignment:
Q  192 attaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatga 263  Q
    |||| ||||||||  ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  38846976 attaggtatgttctggtgtcggacacgtgtcgtatccgacactgacacttgtaattacactgaataatatga 38847047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 12797277 - 12797366
Alignment:
Q  167 actatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||| ||||||||||| ||||||| ||||    ||| || ||||||||||||| |||| |||||||| |||||||||||||| |||||||    
T  12797277 actacgaagcacgaacattcctcggattagacttgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaat 12797366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 23292925 - 23293014
Alignment:
Q  167 actatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||||||||||| ||  |||||| |||| |  ||| || ||||| |||| ||||||| |||||||| ||||||||||||||||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaat 23293014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 28964186 - 28964276
Alignment:
Q  166 aactatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| | ||  |||||| |||| |  ||| || ||||| || ||||||||| |||||||| |||||||||||||| |||||||    
T  28964186 aactatgaagcatggacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaat 28964276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 16073474 - 16073425
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| ||||||| |||| |||||||| |||||||||||||| |||||||    
T  16073474 gtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaat 16073425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 21945583 - 21945534
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||| | |||||||| |||||||||||||| |||||||    
T  21945583 gtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaat 21945534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 29205524 - 29205475
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||||| ||| |||| |||||||||||||| |||||||    
T  29205524 gtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaat 29205475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 4157229 - 4157189
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaatt 247  Q
    ||||| |||||||||||| |||||||| |||||||||||||    
T  4157229 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 4157516 - 4157476
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaatt 247  Q
    ||||| |||||||||||| |||||||| |||||||||||||    
T  4157516 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 5414100 - 5414172
Alignment:
Q  167 actatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacac 239  Q
    ||||||||||||| ||  |||| | || | || ||| ||||||||||||| ||||||| ||||||||||||||    
T  5414100 actatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacac 5414172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 34306744 - 34306824
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaatta 248  Q
    ||||||||||||||| ||||||  |||| |  |||  | ||||| |||| ||||||| |||||||| ||||||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatta 34306824  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 4878027 - 4877942
Alignment:
Q  203 tcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatgannnnnnncaaattattagctgtgtc 288  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||||| ||| || |||       ||||||||||||||||||    
T  4878027 tcctgtgtcggacatgtgtcgtgtccgacaccgacacttgtaattatacttaattatgtgacttttttcaaattattagctgtgtc 4877942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 34595253 - 34595165
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  |||||| |||| || ||| || |||||||||| ||||||| |||||||| |||||||||||||| |||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 34595165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 28152218 - 28152129
Alignment:
Q  167 actatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||||||||||||||  |||||| |||| |  ||| || ||||| |||| ||||||| |||||||| |||||||||||||| |||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 28152129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 32978878 - 32978919
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaatta 248  Q
    ||||| |||||||||||| |||||||| ||||||||||||||    
T  32978878 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatta 32978919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 24645561 - 24645480
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatgannnnnnncaaattattagctgtgtc 288  Q
    ||||| |||| ||||||| || ||||| ||||||||||| |||||||||| || |||       ||||||||||||||||||    
T  24645561 gtgtcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtgatttttttcaaattattagctgtgtc 24645480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 28715414 - 28715326
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  | ||||||||| |  ||| || |||||  ||| ||||||| |||||||| |||||||||||||| |||||||    
T  28715414 ctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 28715326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 32511646 - 32511694
Alignment:
Q  208 tgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||| |||||||||||||||  |||||| |||||| |||||||    
T  32511646 tgtcagacatatgtcgtatccgacaccaacacttataattacactgaat 32511694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 20503584 - 20503496
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  |||||| |||| |  ||| || |||||||||||||||||| ||| |||| |||||||||||||| |||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaat 20503496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 26492184 - 26492233
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||||||||| |||||||| || ||||||||||| |||||||    
T  26492184 gtgtcagacatgtgtcgtgtccgacaccgatacttgtaattacactgaat 26492233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 18840950 - 18841033
Alignment:
Q  165 caactatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaatta 248  Q
    ||||||||||||||| ||  |||||| |||| || ||| || ||||| |||||||||||| || ||||| ||||||||||||||    
T  18840950 caactatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaatta 18841033  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 2438661 - 2438747
Alignment:
Q  170 atgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||| ||  |||||| |||| |  ||| || ||||| |||||||||||| |||||||| |||||||||||||| |||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaat 2438747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 15972992 - 15972904
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| || ||| ||| |||| || ||| || | ||| |||| ||||||| |||||||| |||||||||||||| |||||||    
T  15972992 ctatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 15972904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 30404829 - 30404878
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||||| |||||| | |||||||||||||| |||||||    
T  30404829 gtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaat 30404878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 45509 - 45558
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||| ||||||| |||||||| |||||||||||||| |||||||    
T  45509 gtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 45558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 21880232 - 21880183
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||||| |||||||| |||||||||||||| |||||||    
T  21880232 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaat 21880183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 8878 - 8822
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatga 263  Q
    ||||| |||| ||||||| |||||||| |||||||||||||| ||| ||||||||||    
T  8878 gtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaataatatga 8822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 21576685 - 21576773
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  |||||| |||| |  ||| || |||||||||| ||||||| |||||||  |||||||||||||| |||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaat 21576773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 30502330 - 30502416
Alignment:
Q  170 atgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||||  |||| | |||| | |||| || ||||| |||||||||||| |||||||| ||||| | |||||| |||||||    
T  30502330 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaat 30502416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 30542673 - 30542759
Alignment:
Q  170 atgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||||  |||| | |||| | |||| || ||||| |||||||||||| |||||||| ||||| | |||||| |||||||    
T  30542673 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaat 30542759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 15382539 - 15382503
Alignment:
Q  227 ccgacactgacacttgtaattatactgaataatatga 263  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  15382539 ccgacaccgacacttgtaattatactgaattatatga 15382503  T

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Target: scaffold0652 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 403 - 490
Alignment:
Q  169 tatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||||||||| ||  |||||| |||| || ||| || ||||| |||| | ||||| |||||||| |||||||||||||| |||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaat 490  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 3025631 - 3025582
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||| ||||||| |||||||||||||| | |||||| |||||||    
T  3025631 gtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaat 3025582  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 1815337 - 1815288
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||||| || ||||| |||||||||||||| |||||||    
T  1815337 gtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaat 1815288  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 18337448 - 18337360
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  |||||| || | | |||| || ||||| |||| |||| || |||||||| |||||||||||||| |||||||    
T  18337448 ctatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaat 18337360  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 21530769 - 21530725
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatac 251  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||    
T  21530769 gtgtcggacatgtgtcgtgtccgacaccgacacttataattatac 21530725  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 46348362 - 46348418
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatga 263  Q
    ||||| |||| ||||||| |||||||| |||||||||||||| ||| ||| ||||||    
T  46348362 gtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatatga 46348418  T

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Target: scaffold0697 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 1724 - 1680
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatac 251  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||    
T  1724 gtgtcggacatgtgtcgtgtccgacaccgacacttataattatac 1680  T

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