View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_high_24 (Length: 280)
Name: NF12879_high_24
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 38809661 - 38809395
Alignment:
| Q |
1 |
cttactcctctatacttgattttctttggtaattcatcttgtttcaccttttcctttaactcatcttccattatttgtgtaagaataatgtcattagcat |
100 |
Q |
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| T |
38809661 |
cttactcctctatactttattttctttggtaattcatcttgtttcaccttttcctttaactcatcttccattatttgtgtaagaataatgtcattagcat |
38809562 |
T |
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| Q |
101 |
aatttacaaggccttttatattgagcttcaaaaaatgcacttaagtgaaaatttattcaaggttcaatggattggtaaaaattaccaaacgtgctaaaag |
200 |
Q |
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| T |
38809561 |
aatttacaaggccttttatattgagcttcaaaaaatgcacttaagtgaaaatttattcaaggttcaatggatttgtaaaaattaccaaacgtgctaaaag |
38809462 |
T |
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| Q |
201 |
acacatctatgattgagattggttatagaattcaatgtatgtggatcacataatgtgctcagtgcct |
267 |
Q |
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| T |
38809461 |
acacatctatgattgagattggttatagaattcaatgtatgtggatcacataatgtgctcagtgcct |
38809395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 238
Target Start/End: Complemental strand, 38811619 - 38811491
Alignment:
| Q |
114 |
ttttatattgagcttcaaaaaatgcacttaagtgaaaatttattcaaggttcaatggattggtaaaaattaccaaacgtgctaaaagacacatc----ta |
209 |
Q |
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| T |
38811619 |
ttttatattgagctacaaaaaatgcatttatttggaaatttattcaatgttcaatggattggtaaaaattatcaaacttgctgaatgatatatccgtata |
38811520 |
T |
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| Q |
210 |
tgattgagattggttatagaattcaatgt |
238 |
Q |
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| T |
38811519 |
tgtctgggattggttatagaattcaatgt |
38811491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 38822507 - 38822429
Alignment:
| Q |
111 |
gccttttatattgagcttcaaaaaatgcacttaagtgaaaatttattcaaggttcaatggattggtaaaaattaccaaa |
189 |
Q |
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| T |
38822507 |
gccttttatactgtgctacaaaaaatgcacttatttggaaatttattcaaggttcaatggattagtgaaaattaccaaa |
38822429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 209 - 261
Target Start/End: Complemental strand, 38822429 - 38822377
Alignment:
| Q |
209 |
atgattgagattggttatagaattcaatgtatgtggatcacataatgtgctca |
261 |
Q |
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| T |
38822429 |
atgattgagattggtaatagaattcaatgtatgttgatcacatactctgctca |
38822377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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