View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_high_25 (Length: 274)
Name: NF12879_high_25
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 3675813 - 3676061
Alignment:
| Q |
19 |
cctttaacccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgc |
118 |
Q |
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| T |
3675813 |
cctttaacccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgc |
3675912 |
T |
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| Q |
119 |
ttcttttagctcctcaagtgtgaatgcatgaagtttagaaccagcaaaagaaactgaaagatcttcaatagcttgacttgaacttgaattgcttatatct |
218 |
Q |
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| T |
3675913 |
ttcttttagctcctcaagtgtgaatgcatgaagtttagaaccagcaaaagaaactgaaagatcttcaatagcttgacttgaacttgaattgcttatatct |
3676012 |
T |
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| Q |
219 |
gataaacatagtctttgcaaagaaccttgttttagaacatgtttctctg |
267 |
Q |
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| T |
3676013 |
gataaacatagtctttgcaaagaaccttgttttagaacatgtttctctg |
3676061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 48552940 - 48552715
Alignment:
| Q |
30 |
tgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacctaacatattactccatgagaaattatgtgttgcttcttttagct |
129 |
Q |
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| T |
48552940 |
tgtctgagtttatcatcaacaaaacccttatacacaggtccaaaaccaccttcaccaagcaaattactccttgaaaaattatgtgttgcttctcttagct |
48552841 |
T |
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| Q |
130 |
cctcaagtgtgaatgcatgaagtttagaaccagcaaaagaaactgaaagatcttcaatagcttg---acttgaacttgaattgcttatatctgataaaca |
226 |
Q |
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| T |
48552840 |
cctcaagtgtaaatgtgtaaagctttgaaccagctagtgaaatggaaagatcctcaatagcttgagtagtagagctagaaatgcttatatcagataagct |
48552741 |
T |
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| Q |
227 |
tagtctttgcaaagaaccttgtttta |
252 |
Q |
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| T |
48552740 |
taccctttggaaagaaccttgtttta |
48552715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 10845927 - 10845985
Alignment:
| Q |
27 |
ccttgtctaagtttatcatcaacaaaacccttataaacaggtccaaatccaccttcacc |
85 |
Q |
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| T |
10845927 |
ccttgtctaaaattatcatcaaaataacccttatgaacagttccaaaaccaccttcacc |
10845985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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