View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_high_34 (Length: 238)
Name: NF12879_high_34
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_high_34 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 40072065 - 40072283
Alignment:
| Q |
1 |
agtgagtagaataataaagagttgaagagtaaaagtgagtggaataagagtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40072065 |
agtgagtagaataataaagagttgaagagtaaaagtgagtggaataagagtaatacaaaattgaagatgaattatccaattattgcttgaaagggatgaa |
40072164 |
T |
|
| Q |
101 |
gaacaaaacccaaaatttggtgaaagaaactacatacttatacacacaatcttttgcaatgtaggacaaatagtctaagtagtagaaactttaagtattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
40072165 |
caacaaaacccaaaatttggtgaaagaaactacatacttatacacacaatctttttcaatgtaggacaaatagtctaattagtagaaactttaaatattg |
40072264 |
T |
|
| Q |
201 |
atatcatattagtggttct |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
40072265 |
atatcatattagtggttct |
40072283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 653332 - 653469
Alignment:
| Q |
51 |
taatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaacccaaaatttggtgaaagaaactacatacttatacacacaat |
150 |
Q |
| |
|
||||||||||| ||||||| | |||||||||||||||||||| ||| |||||||||||||| ||||||| || ||| ||||| ||||| | |||| |
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|
| T |
653332 |
taatacaaaatcgaagatgttccatccaattattgcttgaaagttgtgatgaacaaaacccaaactttggtgcaaaaaataacatatttatatatacaac |
653431 |
T |
|
| Q |
151 |
cttttgcaatgtaggacaaatagtctaagtagtagaaac |
189 |
Q |
| |
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||||| |||| ||||||||||||||| | ||||||||| |
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|
| T |
653432 |
ctttt-caatataggacaaatagtctcatcagtagaaac |
653469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 43942951 - 43942810
Alignment:
| Q |
10 |
aataataaagagttgaagagtaaaagtgagtggaataag-agtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaa |
108 |
Q |
| |
|
|||||| ||||| |||||||| ||| ||||||||| || |||||||||| ||||||||||||||| |||||| ||||||||| | | ||| |||||||| |
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|
| T |
43942951 |
aataatcaagagatgaagagttaaaatgagtggaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaa |
43942852 |
T |
|
| Q |
109 |
cccaaaatttggtgaaagaaactacatacttatacacacaat |
150 |
Q |
| |
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|||||||||||||| | ||| ||||| ||||||||||||| |
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| T |
43942851 |
cccaaaatttggtgcacaaaatcacatatttatacacacaat |
43942810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 22074082 - 22073971
Alignment:
| Q |
10 |
aataataaagagttgaagagtaaaagtgagtggaataagagtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaac |
109 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||| || ||||| |||||||||||||||| ||| ||||| ||| ||||||| | ||| ||||||||| |
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| T |
22074082 |
aataataaagagatgaagaaaaaaagtgaggggaaaaat-gtaattcaaaattgaagatgaattatacaattgttgtttgaaagtggtgatgaacaaaac |
22073984 |
T |
|
| Q |
110 |
ccaaaatttggtg |
122 |
Q |
| |
|
||||||||||||| |
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|
| T |
22073983 |
ccaaaatttggtg |
22073971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 5884986 - 5885127
Alignment:
| Q |
10 |
aataataaagagttgaagagtaaaagtgagtggaataag-agtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaa |
108 |
Q |
| |
|
|||||| ||||| |||||||| ||| ||||||||| || |||||||||| ||||||||||||||| |||||| ||||||||| | | ||| |||||||| |
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|
| T |
5884986 |
aataatcaagagatgaagagttaaaatgagtggaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaa |
5885085 |
T |
|
| Q |
109 |
cccaaaatttggtgaaagaaactacatacttatacacacaat |
150 |
Q |
| |
|
|||||||||||||| | ||| ||||| ||||||||||||| |
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|
| T |
5885086 |
cccaaaatttggtgcacaaaatcacatatttatacacacaat |
5885127 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 16856725 - 16856612
Alignment:
| Q |
10 |
aataataaagagttgaagagtaaaagtgagtggaataaga-gtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaa |
108 |
Q |
| |
|
|||||| ||||| |||||||| ||| ||||||||| || | ||||||||| ||||||||||||||| |||||| ||||||||| | | ||| |||||||| |
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|
| T |
16856725 |
aataatcaagagatgaagagttaaaatgagtggaaaaaaaagtaatacaatattgaagatgaactaaccaattgttgcttgaatgcggtgatgaacaaaa |
16856626 |
T |
|
| Q |
109 |
cccaaaatttggtg |
122 |
Q |
| |
|
|||||||||||||| |
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|
| T |
16856625 |
cccaaaatttggtg |
16856612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 26615883 - 26615996
Alignment:
| Q |
10 |
aataataaagagttgaagagtaaaagtgagtggaat-aagagtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaa |
108 |
Q |
| |
|
|||||| ||||| |||||||| ||| |||||| || || | |||||||||||||||||||| ||| |||||| || ||||| | | ||| |||||||| |
|
|
| T |
26615883 |
aataatcaagagatgaagagttaaaatgagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaa |
26615982 |
T |
|
| Q |
109 |
cccaaaatttggtg |
122 |
Q |
| |
|
|||||||||||||| |
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|
| T |
26615983 |
cccaaaatttggtg |
26615996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 26721811 - 26721924
Alignment:
| Q |
10 |
aataataaagagttgaagagtaaaagtgagtggaat-aagagtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaa |
108 |
Q |
| |
|
|||||| ||||| |||||||| ||| |||||| || || | |||||||||||||||||||| ||| |||||| || ||||| | | ||| |||||||| |
|
|
| T |
26721811 |
aataatcaagagatgaagagttaaaatgagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaa |
26721910 |
T |
|
| Q |
109 |
cccaaaatttggtg |
122 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26721911 |
cccaaaatttggtg |
26721924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 27280820 - 27280903
Alignment:
| Q |
10 |
aataataaagagttgaagagtaaaagtgagtggaataagagtaatacaaaattgaagatgaactatccaattattgcttgaaag |
93 |
Q |
| |
|
|||||| ||||| ||||||| |||||||| ||||| || | |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27280820 |
aataatcaagagatgaagagaaaaagtgactggaaaaacatcaatataaaattgaagatgaactatccaattattgcttgaaag |
27280903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 32504339 - 32504252
Alignment:
| Q |
23 |
tgaagagtaaaagtgagtggaataagagtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaaccc |
111 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||||||||||| |||||||||||| || ||| ||| |||| ||||||||||| |
|
|
| T |
32504339 |
tgaagagtaaaagtgagtggaa-aacaataatacaaaattgaagataaactatccaattgttacttaaaaataatgatgaacaaaaccc |
32504252 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 10739 - 10845
Alignment:
| Q |
17 |
aagagttgaagagtaaaagtgagtggaataag-agtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaacccaaaa |
115 |
Q |
| |
|
||||| |||| ||| ||| ||||||||| || ||||| |||| ||||||||||||||| |||||| ||||||||| | | ||| ||||||||||||||| |
|
|
| T |
10739 |
aagagatgaaaagttaaaatgagtggaaaaaacagtaagacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaa |
10838 |
T |
|
| Q |
116 |
tttggtg |
122 |
Q |
| |
|
||||||| |
|
|
| T |
10839 |
tttggtg |
10845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 51167391 - 51167571
Alignment:
| Q |
11 |
ataataaagagttgaagagtaaaagtgagtggaataagagtaatacaaaattgaagatgaactatccaattattgcttgaaagggatgaagaacaaaacc |
110 |
Q |
| |
|
||||||||||| |||||||||||| ||| || || | ||||| ||||||||||| |||| || |||| ||||||| ||| | ||| |||||||| | |
|
|
| T |
51167391 |
ataataaagagatgaagagtaaaacattgtgaaaaaacaataatagaaaattgaagaggaacaattcaatagttgcttggaagtggtgatgaacaaaatc |
51167490 |
T |
|
| Q |
111 |
caaaatttggtgaaagaaactacatacttatacacacaat-cttttgcaatgtaggacaaatagtctaagtagtagaaact |
190 |
Q |
| |
|
||||||||| || | || || | ||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
51167491 |
caaaatttgctgcacaaattcacgaatttatacacacaatgctttttcaatgtaggacaaatagtctccttagtagaaact |
51167571 |
T |
|
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