View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_high_35 (Length: 235)
Name: NF12879_high_35
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 12066320 - 12066116
Alignment:
| Q |
20 |
ctcaattcattcataaacttcattcataacattcttacttatctaccnnnnnnnnttcttagtttgaagaaaagaaggaagaaatacttcatataactct |
119 |
Q |
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| T |
12066320 |
ctcaattcattcataaacttcattcataacattcttagttatctaccaaaaataattcttagtttgaagaaaagaaggaagaaatacttcatacaactct |
12066221 |
T |
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| Q |
120 |
actgaaaaaatttcaggttagttaatcacactcaaatattatatcatattttagttcttacttctgaatt-ttttatttactattcttgatgaaaattct |
218 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12066220 |
actgaaaaattttcaggttagttaatcacactcaaatattatatcatattttagttcttacttctgaatttttttatttactattcttgatgaaaattct |
12066121 |
T |
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| Q |
219 |
tctca |
223 |
Q |
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||||| |
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| T |
12066120 |
tctca |
12066116 |
T |
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