View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_high_38 (Length: 214)
Name: NF12879_high_38
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 43514042 - 43514223
Alignment:
| Q |
15 |
cacagacatacgtggttaaattcaataatatcatttctacatagatcaatatgtcactgttgtggctgatgaacgtgtcattgattgatgaattaagagt |
114 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43514042 |
cacaaacatacatggttaaattcaataatatcatttctacatagatcaatatgtcactgttgtgtctgatgaacgtgtcattgattgatgaattaagagt |
43514141 |
T |
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| Q |
115 |
gcttaaattgaaagtttggtgggatgataaacaaacctgagaaagaaatgggtggagggagagcgaggactcgggtgtggcc |
196 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43514142 |
gcttaaattgaaagtttggtgagatgagaaacaaacctgagaaagaaatgggtggagggagagcgaggactcgggtgtggcc |
43514223 |
T |
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