View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_high_6 (Length: 439)
Name: NF12879_high_6
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 42548076 - 42548475
Alignment:
| Q |
18 |
aactcctcctttcttaacagtatcattgtgttaattcacatatcacaatagcatatttgagttctcttccttttattctcatttatcgttggtgtgtgtg |
117 |
Q |
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| T |
42548076 |
aactcctcctctcttaacagtatcattgtgttaattcacatatcacaatagcatagttgagttctcttccttttattctcatttatcgttggtgtgtgtg |
42548175 |
T |
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| Q |
118 |
--gatagtatctagttctaattaattaaacttagatgtgttttgttatctgttttgtttagattaaattgcatttagtggagtgaattgatgacttatag |
215 |
Q |
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| T |
42548176 |
tggatagtatctaattctaattaattaaacttagatgtgtt------------ttgtttagattaaattgcatttagtggagtgaattgatgacttatag |
42548263 |
T |
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| Q |
216 |
attagatgatgaagaaggaagactcaaccaccctgttcatcagtaaactcattttcttctccttcttacagtttcgtacctctttctcagtctcatattc |
315 |
Q |
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| T |
42548264 |
attagacgatgaagaaggaagattcaaccaccctgttcatcagtaaactcattttcttctccttcttacagtttctcacctctttctcagtctcatattc |
42548363 |
T |
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| Q |
316 |
ttcaactttcccatatgaagcacttcccacaaaatcaggttacctaccaataagtccaacctccacttcctccattttctacacattctatgaagcacag |
415 |
Q |
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| T |
42548364 |
ttcaactttcccatatgaagcacttcccacaaaatcaggttacctaccaataagtccaacctccacttcctccattttctacacattctatgaagcacag |
42548463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 332 - 423
Target Start/End: Original strand, 33015795 - 33015886
Alignment:
| Q |
332 |
gaagcacttcccacaaaatcaggttacctaccaataagtccaacctccacttcctccattttctacacattctatgaagcacagaactccac |
423 |
Q |
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| T |
33015795 |
gaagcccttcccacaagatcaggttaccttccagtaagtcacacctccaattcctccattttctatacattctatgaagcacaaaactccac |
33015886 |
T |
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