View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_low_10 (Length: 386)
Name: NF12879_low_10
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 31636994 - 31637355
Alignment:
| Q |
19 |
ctagtgacttggcacctcaagcactaaacttgaacatgcatagcatatcccagtttctaaggaaatactcatcctctttaattagtctatttcttattta |
118 |
Q |
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| T |
31636994 |
ctagtgacttggcacctcaagcactaaacttgaacatgcatagcatatgccagtttctaaggaaatactcatcctctttaattagtctatttcttattta |
31637093 |
T |
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| Q |
119 |
gctagttttcacctttacgacaaagatagcttgcattttttgctatacataaaaacaaagcaacatatattatatatagcctctaaccacaaactactaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31637094 |
gctagttttcacctttacgacaaagatagcttgcattttttgctatacataaaaacaaagcaacatatattatatatagcctctaaccacaaactactaa |
31637193 |
T |
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| Q |
219 |
caaccaattacaaaaaactttgttacatcaaccaccatgagtattagtgttactaataccattattcttttctttataacccaactccttgtaagagcag |
318 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31637194 |
caaccaattacacaaaactttgttacatcaaccatcatgagtattagtgttactaataccattattcttttctttataacccaactccttgtaagagcag |
31637293 |
T |
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| Q |
319 |
aatcaattaccagaggagattttccagagggctttatctttggaactgcttcttcatctcac |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31637294 |
aatcaattaccagaggagattttccagagggctttatctttggaactgcttcttcagctcac |
31637355 |
T |
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