View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12879_low_15 (Length: 343)

Name: NF12879_low_15
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12879_low_15
NF12879_low_15
[»] chr5 (8 HSPs)
chr5 (7-281)||(43237854-43238130)
chr5 (214-313)||(43228142-43228240)
chr5 (128-209)||(43228027-43228108)
chr5 (14-79)||(6525892-6525955)
chr5 (13-84)||(18625623-18625691)
chr5 (158-211)||(43245266-43245319)
chr5 (11-84)||(42645471-42645543)
chr5 (22-84)||(972602-972661)
[»] chr7 (4 HSPs)
chr7 (10-84)||(8059894-8059966)
chr7 (11-84)||(30627674-30627744)
chr7 (7-93)||(33906327-33906412)
chr7 (7-79)||(45957346-45957416)
[»] scaffold0160 (1 HSPs)
scaffold0160 (7-84)||(22128-22203)
[»] chr2 (5 HSPs)
chr2 (7-75)||(32517834-32517900)
chr2 (12-84)||(18741405-18741475)
chr2 (12-79)||(41164661-41164725)
chr2 (11-74)||(43035490-43035550)
chr2 (14-84)||(16010621-16010688)
[»] chr1 (9 HSPs)
chr1 (7-79)||(44836130-44836200)
chr1 (7-65)||(35068920-35068976)
chr1 (11-84)||(49500911-49500981)
chr1 (9-74)||(8793192-8793255)
chr1 (9-65)||(8312554-8312608)
chr1 (13-84)||(43086479-43086547)
chr1 (13-84)||(48731764-48731832)
chr1 (23-91)||(50905496-50905562)
chr1 (7-79)||(3628703-3628774)
[»] chr4 (6 HSPs)
chr4 (7-75)||(28758423-28758489)
chr4 (7-65)||(33530265-33530321)
chr4 (7-65)||(48391735-48391791)
chr4 (13-93)||(13632142-13632219)
chr4 (11-91)||(54096941-54097018)
chr4 (13-76)||(49535937-49535997)
[»] chr3 (3 HSPs)
chr3 (7-75)||(21129092-21129158)
chr3 (14-84)||(37278543-37278611)
chr3 (22-84)||(9493559-9493618)
[»] chr8 (3 HSPs)
chr8 (9-79)||(33128177-33128245)
chr8 (13-84)||(36586534-36586602)
chr8 (7-91)||(40326480-40326562)
[»] chr6 (3 HSPs)
chr6 (13-84)||(27866640-27866709)
chr6 (13-93)||(31205182-31205259)
chr6 (13-84)||(9727547-9727615)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 43237854 - 43238130
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgtttgtctatccnnnnnnnnnnn- 105  Q
    ||||||||||| ||||||| ||||||| ||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||                
T  43237854 ggacgtcatgaccgaggtttgaaccccggtacctctac--tttgtatgtgtgagtttatcatgtctttgtcatttcgtttgtctatccaaaaaaaaaaaa 43237951  T
Q  106 ---taatgcatgtgnnnnnnnnnataataataatcaatatattaatagatgtatcaaatcattaaaccacaacaatgatttaaaattataagtaacaaaa 202  Q
       |||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43237952 agataatgcatgtgtttttttttttaataataatcaatatattaatagatgtatcaaatcattaaaccacaacaatgatttaaaattataagtaacaaaa 43238051  T
Q  203 gcaaaccaccgttaaaaatgatatcgatatgagaatactacggtagcgtgacaacaggataagaaaggaaaatgctgaa 281  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43238052 gcaaaccactgttaaaaatgatatcgatatgagaatactacggtagcgtgacaacaggataagaaaggaaaatgctgaa 43238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 43228142 - 43228240
Alignment:
Q  214 ttaaaaatgatatcgatatgagaatactacggtagcgtgacaacaggataagaaaggaaaatgctgaagtttacatgtaaacaagcaagaaatgcaagaa 313  Q
    |||||| | ||||||||| |||||||||||||||| |||| ||||| ||||||||| ||||||||||| ||||||||| ||||||||||||||| |||||    
T  43228142 ttaaaatttatatcgataagagaatactacggtagtgtgataacagaataagaaagcaaaatgctgaaatttacatgt-aacaagcaagaaatgtaagaa 43228240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 43228027 - 43228108
Alignment:
Q  128 aataataatcaatatattaatagatgtatcaaatcattaaaccacaacaatgatttaaaattataagtaacaaaagcaaacc 209  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||| || | |||||||||||||||    
T  43228027 aataataatcaatatattaatagatgtatcaaaacattaaactacaacaataattcaaaatcatgaataacaaaagcaaacc 43228108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 6525892 - 6525955
Alignment:
Q  14 atgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcat 79  Q
    ||||||| ||||||||||||| ||||||  |||||||| ||||||||||||| ||| |||||||||    
T  6525892 atgatcggggttcgaaccccaatacctc--cactttgtgtgtgtgagtttatgatgactttgtcat 6525955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 18625691 - 18625623
Alignment:
Q  13 catgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    |||||||| |||||||||||||||||||| ||   |||||||||||||||||| ||| ||||| ||| ||||    
T  18625691 catgatcggggttcgaaccccagtacctccac---ttgtatgtgtgagtttataatggctttgccatttcgt 18625623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 43245266 - 43245319
Alignment:
Q  158 aaatcattaaaccacaacaatgatttaaaattataagtaacaaaagcaaaccac 211  Q
    |||||||||||| ||||||||||||| |||  || |||||||||||||||||||    
T  43245266 aaatcattaaactacaacaatgattttaaaccatgagtaacaaaagcaaaccac 43245319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 42645543 - 42645471
Alignment:
Q  11 gtcatgatcgaggttcgaaccccagtacctctacactt-tgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    |||||||||| |||||||||| | |||||||  ||||| ||||||||||||||||| ||| ||||||||| ||||    
T  42645543 gtcatgatcggggttcgaacctcggtacctc--cacttatgtatgtgtgagtttataatggctttgtcatttcgt 42645471  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 972661 - 972602
Alignment:
Q  22 ggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    |||||||||||| ||||||||||   |||| ||||||||||||| ||| ||||||||| ||||    
T  972661 ggttcgaaccccggtacctctac---ttgtgtgtgtgagtttataatgactttgtcatttcgt 972602  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 8059894 - 8059966
Alignment:
Q  10 cgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    ||||||||||| |||||||||||| ||||||| ||  ||||||||||||||||| ||||| ||||||||| ||||    
T  8059894 cgtcatgatcggggttcgaaccccggtacctcaac--tttgtatgtgtgagtttgtcatgactttgtcatctcgt 8059966  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 30627674 - 30627744
Alignment:
Q  11 gtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    ||||||||||||||||||||||| ||||||| ||   |||| ||||||||||||  ||| ||||||||| ||||    
T  30627674 gtcatgatcgaggttcgaaccccggtacctccac---ttgtgtgtgtgagtttacaatgactttgtcatttcgt 30627744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 33906327 - 33906412
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgtttgtctatc 93  Q
    ||||||||||| || ||||||||| || ||||||| || ||| || ||||||||||||| ||| ||||||||| |||| | ||||||    
T  33906327 ggacgtcatgaccggggttcgaacaccggtacctccacgctt-gtgtgtgtgagtttataatggctttgtcatttcgtctatctatc 33906412  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 45957416 - 45957346
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcat 79  Q
    |||||||||||||  |||||||||||| |||||||  |||||||| ||||| ||||||| | | |||||||||    
T  45957416 ggacgtcatgatcagggttcgaaccccggtacctc--cactttgtgtgtgttagtttatgaagactttgtcat 45957346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 22128 - 22203
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    |||||||||||||| ||||||||||||  ||||||  |||||||| ||||||||||||| ||| ||||||||| ||||    
T  22128 ggacgtcatgatcggggttcgaaccccgatacctc--cactttgtgtgtgtgagtttatgatgactttgtcatctcgt 22203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 32517900 - 32517834
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttg 75  Q
    ||||||||||| ||||||||||||||| |||||||  |||||||| ||||||||||||| ||| |||||    
T  32517900 ggacgtcatgaccgaggttcgaaccccggtacctc--cactttgtgtgtgtgagtttatgatgactttg 32517834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 18741475 - 18741405
Alignment:
Q  12 tcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    ||||||||||||||| ||| || |||||||  |||||||| ||||||||||||| ||| ||||||||| ||||    
T  18741475 tcatgatcgaggttcaaactccggtacctc--cactttgtgtgtgtgagtttatgatgactttgtcatctcgt 18741405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 41164725 - 41164661
Alignment:
Q  12 tcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcat 79  Q
    |||||| || |||||||||||||||||||||||   || | ||||||||||||| ||| |||||||||    
T  41164725 tcatgaccggggttcgaaccccagtacctctac---ttatgtgtgtgagtttataatggctttgtcat 41164661  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 43035490 - 43035550
Alignment:
Q  11 gtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtcttt 74  Q
    |||||||||| |||||||||||| ||||||||||   |||| ||||||||||||| ||| ||||    
T  43035490 gtcatgatcggggttcgaaccccggtacctctac---ttgtgtgtgtgagtttataatggcttt 43035550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 16010688 - 16010621
Alignment:
Q  14 atgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    ||||||| |||||||||||| ||||||| ||   |||| ||||||||||||| ||| ||||||||| ||||    
T  16010688 atgatcggggttcgaaccccggtacctcaac---ttgtgtgtgtgagtttataatggctttgtcatttcgt 16010621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 44836200 - 44836130
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcat 79  Q
    |||||||||||||| |||||||||||| ||| |||  |||||| ||||||||||||||| ||| |||||||||    
T  44836200 ggacgtcatgatcggggttcgaaccccggtatctc--cactttatatgtgtgagtttatgatggctttgtcat 44836130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 35068920 - 35068976
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttat 65  Q
    |||||||||||||||||||||||  ||| ||||||  |||||||| |||||||||||||    
T  35068920 ggacgtcatgatcgaggttcgaattccaatacctc--cactttgtgtgtgtgagtttat 35068976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 49500911 - 49500981
Alignment:
Q  11 gtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    ||||||||||||||||||||||| ||||||| ||   |||| ||||||||||||| ||  ||||||||| ||||    
T  49500911 gtcatgatcgaggttcgaaccccggtacctccac---ttgtgtgtgtgagtttataatagctttgtcatttcgt 49500981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 8793255 - 8793192
Alignment:
Q  9 acgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtcttt 74  Q
    ||||||||| || |||||||||||| |||||||  |||||||| ||||||||||||| ||| ||||    
T  8793255 acgtcatgaccggggttcgaaccccggtacctc--cactttgtgtgtgtgagtttatgatgacttt 8793192  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 8312608 - 8312554
Alignment:
Q  9 acgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttat 65  Q
    |||| |||||||||||||||||||| |||||||  |||||||| || ||||||||||    
T  8312608 acgttatgatcgaggttcgaaccccggtacctc--cactttgtgtgagtgagtttat 8312554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 43086547 - 43086479
Alignment:
Q  13 catgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    |||||||| |||||||||||| ||||||| ||   |||| ||||||||||||| ||| ||||||||| ||||    
T  43086547 catgatcggggttcgaaccccggtacctccac---ttgtgtgtgtgagtttataatggctttgtcatttcgt 43086479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 48731832 - 48731764
Alignment:
Q  13 catgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    ||||| || |||||||||||| ||||||||||   |||| ||||||||||||| ||| ||||||||| ||||    
T  48731832 catgaccggggttcgaaccccggtacctctac---ttgtgtgtgtgagtttataatggctttgtcatttcgt 48731764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 50905496 - 50905562
Alignment:
Q  23 gttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgtttgtcta 91  Q
    ||||||||| | ||||||||||  ||||| ||||||||||||| ||| ||||||||| |||||| ||||    
T  50905496 gttcgaacctcggtacctctac--tttgtgtgtgtgagtttataatgactttgtcatctcgtttatcta 50905562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 3628703 - 3628774
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcat 79  Q
    ||||||| |||||| ||||||||| || | ||||| || |||||| ||||||||||||| ||| |||||||||    
T  3628703 ggacgtcttgatcggggttcgaactccggcacctccac-ctttgtgtgtgtgagtttatgatggctttgtcat 3628774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 28758423 - 28758489
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttg 75  Q
    ||||||||||| ||  |||||||||||||||||||  |||||||| ||||||||||||| ||| |||||    
T  28758423 ggacgtcatgaccggagttcgaaccccagtacctc--cactttgtgtgtgtgagtttataatgactttg 28758489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 33530265 - 33530321
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttat 65  Q
    ||||||||||| |||||||| |||| ||||||||||  ||||||| |||||||||||||    
T  33530265 ggacgtcatgaccgaggttcaaacctcagtacctct--actttgtgtgtgtgagtttat 33530321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 48391735 - 48391791
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttat 65  Q
    |||||||||||  | |||||||||||||||||||||  | |||||||||||||||||||    
T  48391735 ggacgtcatgactggggttcgaaccccagtacctct--attttgtatgtgtgagtttat 48391791  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 13632142 - 13632219
Alignment:
Q  13 catgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgtttgtctatc 93  Q
    ||||| ||||||||||||||||||||||| ||   |||| ||||||||||||| ||| ||||| ||| |||| | ||||||    
T  13632142 catgaccgaggttcgaaccccagtacctccac---ttgtgtgtgtgagtttataatggctttgccatttcgtctatctatc 13632219  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 54097018 - 54096941
Alignment:
Q  11 gtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgtttgtcta 91  Q
    ||||||| ||| ||||||||||| ||||||| ||   |||| ||||||||||||| ||| ||||||||| |||| ||||||    
T  54097018 gtcatgaccgacgttcgaaccccggtacctccac---ttgtgtgtgtgagtttataatgactttgtcatttcgtctgtcta 54096941  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 49535937 - 49535997
Alignment:
Q  13 catgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgt 76  Q
    |||||||| |||||||||||||||||||||||   |||| ||||| ||||||| ||| ||||||    
T  49535937 catgatcggggttcgaaccccagtacctctac---ttgtgtgtgtcagtttataatggctttgt 49535997  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 21129092 - 21129158
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttg 75  Q
    |||||||||||||| |||||||||||| ||||||||  ||||||| | ||||||||||| ||| |||||    
T  21129092 ggacgtcatgatcggggttcgaaccccggtacctct--actttgtgtttgtgagtttatgatggctttg 21129158  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 37278611 - 37278543
Alignment:
Q  14 atgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    ||||||| ||||| || || ||||||||  |||||||||||||||||||||| ||| ||||||||| ||||    
T  37278611 atgatcggggttcaaatcctagtacctc--cactttgtatgtgtgagtttatgatgactttgtcatctcgt 37278543  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 9493559 - 9493618
Alignment:
Q  22 ggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    |||||||||||| ||||||| ||   |||||||||||||||||| ||| ||||||||| ||||    
T  9493559 ggttcgaaccccggtacctccac---ttgtatgtgtgagtttataatgactttgtcatttcgt 9493618  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 33128245 - 33128177
Alignment:
Q  9 acgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcat 79  Q
    |||||||||||| |||||||||||| |||||||  |||||||| | ||||||||||| |||  ||||||||    
T  33128245 acgtcatgatcggggttcgaaccccggtacctc--cactttgtgtatgtgagtttattatgcatttgtcat 33128177  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 36586534 - 36586602
Alignment:
Q  13 catgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    ||||| || |||||||||||| ||||||| ||   |||||||||||||||||| ||| ||||||||| ||||    
T  36586534 catgaccggggttcgaaccccggtacctccac---ttgtatgtgtgagtttataatggctttgtcatttcgt 36586602  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 40326562 - 40326480
Alignment:
Q  7 ggacgtcatgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgtttgtcta 91  Q
    |||||||||||||| |||| |||||| ||||  |||||  ||||| ||||||||||||| ||  ||||||||| |||| ||||||    
T  40326562 ggacgtcatgatcggggtttgaaccctagtatttctac--tttgtgtgtgtgagtttatgatagctttgtcatctcgtctgtcta 40326480  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 27866640 - 27866709
Alignment:
Q  13 catgatcgaggttcgaaccccagtacctctacactttgtatgtgtgag-tttatcatgtctttgtcatgtcgt 84  Q
    |||||||| ||||||||||||| |||||||||   |||| |||||||| ||||| ||||||||||||| ||||    
T  27866640 catgatcggggttcgaaccccaatacctctac---ttgtgtgtgtgagttttataatgtctttgtcatttcgt 27866709  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 31205259 - 31205182
Alignment:
Q  13 catgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgtttgtctatc 93  Q
    |||||||| |||||||||||||||||||| ||   |||| ||||||||||||| ||| ||||| ||| |||| | ||||||    
T  31205259 catgatcggggttcgaaccccagtacctccac---ttgtgtgtgtgagtttataatggctttgccatttcgtctatctatc 31205182  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 9727547 - 9727615
Alignment:
Q  13 catgatcgaggttcgaaccccagtacctctacactttgtatgtgtgagtttatcatgtctttgtcatgtcgt 84  Q
    |||||||| |||||||||||| ||||||| ||   |||| ||||||||||||| ||| ||||||||| ||||    
T  9727547 catgatcggggttcgaacccctgtacctccac---ttgtgtgtgtgagtttataatgactttgtcatttcgt 9727615  T

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