View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_low_2 (Length: 799)
Name: NF12879_low_2
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 117 - 783
Target Start/End: Complemental strand, 42899912 - 42899225
Alignment:
| Q |
117 |
atataagaaatgaaaagaaaaatatttgattccgaatggtcccttccctttgggaagaatagtgacagtatttcacatacaaaaaggataaaataaagtt |
216 |
Q |
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| T |
42899912 |
atataagaaatgaaaagaaaaatatttgattccgaatggtcccttccctttgggaagaatagtgacagtatttcacgtacaaaaaggataaaataaattt |
42899813 |
T |
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| Q |
217 |
taaattatgaagacnnnnnnn------------gaaagatatatacaccaaactaattaccttcccatggtttttgggaatggttttcttgatgattgga |
304 |
Q |
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| T |
42899812 |
taaattatgaagacaaaaaaaagggcaaaaaaagaaagatatatacaccaaactaattaccttcccatggtttttgggaatggttttcttgatgattgga |
42899713 |
T |
|
| Q |
305 |
gttggaagagttcatgcaacttcccataccagcaatggtgaggatatcactatcagagagtggtttaagacctaagaaatctcttgtaaatgcattgttt |
404 |
Q |
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| T |
42899712 |
gttggaagggttcatgcaacttcccataccagcaatggtgaggatatcactatcagagagtggtttaagacctaagaaatctcttgtaaatgcattgttt |
42899613 |
T |
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| Q |
405 |
cctcca---------tcgtcatcattggtggttgtttttgtaatatcattatcaccatcatgattgatattatgatcttgatttgaatgaagaatatttc |
495 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899612 |
cctccagcggcaacatcgtcatcattggtggttgtttttggaatatcattatcaccatcatgattgatattatgatcttgatttgaatgaagaatatttc |
42899513 |
T |
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| Q |
496 |
cagcaaaagtatcctcaaaagaagttccatgaaatccagaagaagagaaagagttgtttatcatttggtcttcacatgaggacaaattcaaactaaaatt |
595 |
Q |
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| T |
42899512 |
cagcaaaagtatcctcaaaagaagttccatgaaatccagaagaagagaaagagttgtttatcatttggtcttcacatgaggacaaattcaaactaaaatt |
42899413 |
T |
|
| Q |
596 |
accatttgagtttatcatgttgttggtggcagagtcaacaatagacacgtgaccctgttggtgggtcccactcatcatggactgtgatgagcatgagctg |
695 |
Q |
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| T |
42899412 |
accatttgagtttatcatgttgttggtggcagagtcaacaatagacacgtgaccctgttggtgggtcccactcatcatggactgtgatgagcatgagctg |
42899313 |
T |
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| Q |
696 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtg |
783 |
Q |
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| T |
42899312 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtg |
42899225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 42900943 - 42900836
Alignment:
| Q |
18 |
ctatgtacacattaattactcttacttgcatatttgtattacatcacacacaccttagaaatattatggtcatgcatgttttgtaaaataacaagatata |
117 |
Q |
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| T |
42900943 |
ctatgtacacattaattactcttacttgcatatttgtattacatcacacacaccttagaaatattatggtcatgcatgttttgtaaaataacaagatata |
42900844 |
T |
|
| Q |
118 |
tataagaa |
125 |
Q |
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| T |
42900843 |
tataagaa |
42900836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 696 - 745
Target Start/End: Original strand, 5787617 - 5787666
Alignment:
| Q |
696 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtg |
745 |
Q |
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| T |
5787617 |
gttgcacccatttgagctgctttctgcaacaatgcagtagctgacatgtg |
5787666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 696 - 759
Target Start/End: Complemental strand, 36990900 - 36990837
Alignment:
| Q |
696 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcag |
759 |
Q |
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||||||||||| ||||| ||||| |||| |||||| || ||||||||||||||||||| ||||| |
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| T |
36990900 |
gttgcacccatttgagcagctttttgtagcaatgcagtggctgacatgtgaggtgaagttgcag |
36990837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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