View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_low_20 (Length: 307)
Name: NF12879_low_20
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 171809 - 172082
Alignment:
| Q |
15 |
atgaatttgaaagaggaagctgctctttctggccctgatcgtgttttcacatcaagaaaaattgaattgagaaaacaaaattcttattggcacggtagta |
114 |
Q |
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| T |
171809 |
atgaatttgaaagaggaagctgctcttcctggccctgatcgtgttttcacatcaagaaaaattgaattgagaaaacaaaattcttattggcacggtagta |
171908 |
T |
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| Q |
115 |
ctgcacaattgtcaagattttctaattcagttgcaattcgaggtgattcacgaattgatatgagtggagactgtagtttgaactcacagtggttagagga |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171909 |
ctgcacaattgtcaagattttctaattcagttgcaattcgaggtgattcacaacttgatatgagtggagactgtagtttgaactcacagtggttagagga |
172008 |
T |
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| Q |
215 |
tcagtttgatacgagatatagtcatttggatgatggtgagtccaatcaattactggatggaaccaaacattcac |
288 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
172009 |
tcagtttgatatgagatatagtcatttggatgatggtgagtccaatcaattactggatggaaccaaacattcac |
172082 |
T |
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