View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12879_low_21 (Length: 299)

Name: NF12879_low_21
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12879_low_21
NF12879_low_21
[»] chr2 (3 HSPs)
chr2 (55-291)||(40071743-40071969)
chr2 (1-32)||(40071997-40072028)
chr2 (63-125)||(32743373-32743434)
[»] scaffold0182 (2 HSPs)
scaffold0182 (60-129)||(10590-10659)
scaffold0182 (212-244)||(10485-10517)
[»] chr6 (4 HSPs)
chr6 (60-129)||(16856800-16856869)
chr6 (60-127)||(26615737-26615804)
chr6 (60-127)||(26721665-26721732)
chr6 (216-244)||(24076996-24077024)
[»] chr4 (2 HSPs)
chr4 (60-129)||(43943024-43943093)
chr4 (212-244)||(43943166-43943198)
[»] chr3 (2 HSPs)
chr3 (60-129)||(5884844-5884913)
chr3 (212-244)||(5884739-5884771)
[»] chr1 (1 HSPs)
chr1 (60-124)||(51167249-51167312)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 55 - 291
Target Start/End: Complemental strand, 40071969 - 40071743
Alignment:
Q  55 catcgatatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgtgggtatgtgggaannnnnnnnatgtga 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |             ||||||    
T  40071969 catcgatatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtacgtgggcattt---------ttttatgtga 40071879  T
Q  155 attaggaaaataggataaatgatgcttcnnnnnnnnnnnnnnnnncatccttgctgttcatgaagaagtttatgaaaaatggttgttcattatcacttgg 254  Q
    ||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40071878 attaggaaaataggataaatgatgcttcttttttcattttgttt-catccttgctgttcatgaagaagtttatgaaaaatggttgttcattatcacttgg 40071780  T
Q  255 tattttagtttttcttcattttgtcactcttcatctc 291  Q
    |||||||||||||||||||||||||||||||||||||    
T  40071779 tattttagtttttcttcattttgtcactcttcatctc 40071743  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 40071997 - 40072028
Alignment:
Q  1 atctaagagtaacttgactccctataatgtca 32  Q
    ||||||||||||||||||||||||||||||||    
T  40071997 atctaagagtaacttgactccctataatgtca 40072028  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 32743434 - 32743373
Alignment:
Q  63 tgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtat 125  Q
    ||||| ||||| ||||||||  | | ||||||||||| |||||||||||||||||||||||||    
T  32743434 tgatgtttgttagtctattttcctgtctttctttcat-gtttcttttattccttaatgtgtat 32743373  T

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Target: scaffold0182 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 10659 - 10590
Alignment:
Q  60 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgtgg 129  Q
    |||||||| ||||| |||||||| || |||||||||| ||| ||||||||||||||||||||||||||||    
T  10659 atatgatgtttgttagtctatttttccgactttcttttatattttcttttattccttaatgtgtatgtgg 10590  T

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Target: scaffold0182; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 10517 - 10485
Alignment:
Q  212 tcatgaagaagtttatgaaaaatggttgttcat 244  Q
    |||||||||||||||| ||||||||||||||||    
T  10517 tcatgaagaagtttataaaaaatggttgttcat 10485  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 16856800 - 16856869
Alignment:
Q  60 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgtgg 129  Q
    |||||||| ||||| |||||||| || |||||||||| ||| ||||||||||||||||||||||||||||    
T  16856800 atatgatgtttgttagtctatttttccgactttcttttatattttcttttattccttaatgtgtatgtgg 16856869  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 26615804 - 26615737
Alignment:
Q  60 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgt 127  Q
    |||||||| ||||| ||| |||| || |||||||||| ||| |||||||||||||||||| |||||||    
T  26615804 atatgatgtttgttagtccatttttccgactttcttttatattttcttttattccttaatatgtatgt 26615737  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 26721732 - 26721665
Alignment:
Q  60 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgt 127  Q
    |||||||| ||||| ||| |||| || |||||||||| ||| |||||||||||||||||| |||||||    
T  26721732 atatgatgtttgttagtccatttttccgactttcttttatattttcttttattccttaatatgtatgt 26721665  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 244
Target Start/End: Original strand, 24076996 - 24077024
Alignment:
Q  216 gaagaagtttatgaaaaatggttgttcat 244  Q
    |||||||||||||||||||||||||||||    
T  24076996 gaagaagtttatgaaaaatggttgttcat 24077024  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 43943024 - 43943093
Alignment:
Q  60 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgtgg 129  Q
    |||||||| ||||| |||||||| ||  ||||||||| ||| ||||||||||||||||||||||||||||    
T  43943024 atatgatgtttgttagtctatttttccaactttcttttatattttcttttattccttaatgtgtatgtgg 43943093  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 43943166 - 43943198
Alignment:
Q  212 tcatgaagaagtttatgaaaaatggttgttcat 244  Q
    |||||||||||||||| ||||||||||||||||    
T  43943166 tcatgaagaagtttataaaaaatggttgttcat 43943198  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 5884913 - 5884844
Alignment:
Q  60 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgtgg 129  Q
    |||| ||| ||||| |||||||| ||  ||||||||| ||| ||||||||||||||||||||||||||||    
T  5884913 atataatgtttgttagtctatttttccaactttcttttatattttcttttattccttaatgtgtatgtgg 5884844  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 5884771 - 5884739
Alignment:
Q  212 tcatgaagaagtttatgaaaaatggttgttcat 244  Q
    |||||||||||||||| ||||||||||||||||    
T  5884771 tcatgaagaagtttataaaaaatggttgttcat 5884739  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 51167312 - 51167249
Alignment:
Q  60 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgta 124  Q
    |||||||| ||||| ||||||||  | | ||||||||||| ||||||||||||||||||||||||    
T  51167312 atatgatgtttgttagtctattttcccgtctttctttcat-gtttcttttattccttaatgtgta 51167249  T

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