View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12879_low_22 (Length: 298)

Name: NF12879_low_22
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12879_low_22
NF12879_low_22
[»] chr2 (3 HSPs)
chr2 (1-290)||(40071743-40072021)
chr2 (62-124)||(32743373-32743434)
chr2 (1-41)||(653241-653281)
[»] scaffold0182 (3 HSPs)
scaffold0182 (59-128)||(10590-10659)
scaffold0182 (1-42)||(10672-10713)
scaffold0182 (211-243)||(10485-10517)
[»] chr6 (5 HSPs)
chr6 (59-128)||(16856800-16856869)
chr6 (59-126)||(26615737-26615804)
chr6 (59-126)||(26721665-26721732)
chr6 (1-42)||(16856744-16856785)
chr6 (215-243)||(24076996-24077024)
[»] chr4 (3 HSPs)
chr4 (59-128)||(43943024-43943093)
chr4 (1-42)||(43942970-43943011)
chr4 (211-243)||(43943166-43943198)
[»] chr3 (2 HSPs)
chr3 (1-128)||(5884844-5884967)
chr3 (211-243)||(5884739-5884771)
[»] chr1 (1 HSPs)
chr1 (59-123)||(51167249-51167312)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 40072021 - 40071743
Alignment:
Q  1 atagggagtcaagttactcttagattggtcaagtatttaagcaatannnnnnncatcgatatgatggttgtttgtctatttgtcagactttctttcatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  40072021 atagggagtcaagttactcttagattggtcaagtatttaagcaatatttttt-catcgatatgatggttgtttgtctatttgtcagactttctttcatag 40071923  T
Q  101 tttcttttattccttaatgtgtatgtgggtatgtgggaannnnnnnnatgtgaattaggaaaataggataaatgatgcttcnnnnnnnnnnnnnnnnnca 200  Q
    ||||||||||||||||||||||| ||||| || |             ||||||||||||||||||||||||||||||||||                 ||    
T  40071922 tttcttttattccttaatgtgtacgtgggcattt---------ttttatgtgaattaggaaaataggataaatgatgcttcttttttcattttgttt-ca 40071833  T
Q  201 tccttgctgttcatgaagaagtttatgaaaaatggttgttcattatcacttggtattttagtttttcttcattttgtcactcttcatctc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40071832 tccttgctgttcatgaagaagtttatgaaaaatggttgttcattatcacttggtattttagtttttcttcattttgtcactcttcatctc 40071743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 32743434 - 32743373
Alignment:
Q  62 tgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtat 124  Q
    ||||| ||||| ||||||||  | | ||||||||||| |||||||||||||||||||||||||    
T  32743434 tgatgtttgttagtctattttcctgtctttctttcat-gtttcttttattccttaatgtgtat 32743373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 653281 - 653241
Alignment:
Q  1 atagggagtcaagttactcttagattggtcaagtatttaag 41  Q
    ||||||| |||| ||||||||||||||||||| ||||||||    
T  653281 atagggaatcaacttactcttagattggtcaaatatttaag 653241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 10659 - 10590
Alignment:
Q  59 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgtgg 128  Q
    |||||||| ||||| |||||||| || |||||||||| ||| ||||||||||||||||||||||||||||    
T  10659 atatgatgtttgttagtctatttttccgactttcttttatattttcttttattccttaatgtgtatgtgg 10590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10713 - 10672
Alignment:
Q  1 atagggagtcaagttactcttagattggtcaagtatttaagc 42  Q
    |||||||||||| ||||| ||||||||||||| |||||||||    
T  10713 atagggagtcaaattacttttagattggtcaaatatttaagc 10672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 10517 - 10485
Alignment:
Q  211 tcatgaagaagtttatgaaaaatggttgttcat 243  Q
    |||||||||||||||| ||||||||||||||||    
T  10517 tcatgaagaagtttataaaaaatggttgttcat 10485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 16856800 - 16856869
Alignment:
Q  59 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgtgg 128  Q
    |||||||| ||||| |||||||| || |||||||||| ||| ||||||||||||||||||||||||||||    
T  16856800 atatgatgtttgttagtctatttttccgactttcttttatattttcttttattccttaatgtgtatgtgg 16856869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 26615804 - 26615737
Alignment:
Q  59 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgt 126  Q
    |||||||| ||||| ||| |||| || |||||||||| ||| |||||||||||||||||| |||||||    
T  26615804 atatgatgtttgttagtccatttttccgactttcttttatattttcttttattccttaatatgtatgt 26615737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 26721732 - 26721665
Alignment:
Q  59 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgt 126  Q
    |||||||| ||||| ||| |||| || |||||||||| ||| |||||||||||||||||| |||||||    
T  26721732 atatgatgtttgttagtccatttttccgactttcttttatattttcttttattccttaatatgtatgt 26721665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16856744 - 16856785
Alignment:
Q  1 atagggagtcaagttactcttagattggtcaagtatttaagc 42  Q
    |||||||||| ||||||| ||||||||||||| |||||||||    
T  16856744 atagggagtccagttacttttagattggtcaaatatttaagc 16856785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 24076996 - 24077024
Alignment:
Q  215 gaagaagtttatgaaaaatggttgttcat 243  Q
    |||||||||||||||||||||||||||||    
T  24076996 gaagaagtttatgaaaaatggttgttcat 24077024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 43943024 - 43943093
Alignment:
Q  59 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgtatgtgg 128  Q
    |||||||| ||||| |||||||| ||  ||||||||| ||| ||||||||||||||||||||||||||||    
T  43943024 atatgatgtttgttagtctatttttccaactttcttttatattttcttttattccttaatgtgtatgtgg 43943093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43942970 - 43943011
Alignment:
Q  1 atagggagtcaagttactcttagattggtcaagtatttaagc 42  Q
    |||||||||||| ||||| ||||||||||||| |||||||||    
T  43942970 atagggagtcaaattacttttagattggtcaaatatttaagc 43943011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 43943166 - 43943198
Alignment:
Q  211 tcatgaagaagtttatgaaaaatggttgttcat 243  Q
    |||||||||||||||| ||||||||||||||||    
T  43943166 tcatgaagaagtttataaaaaatggttgttcat 43943198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5884967 - 5884844
Alignment:
Q  1 atagggagtcaagttactcttagattggtcaagtatttaagcaatannnnnnncatcgatatgatggttgtttgtctatttgtcagactttctttcatag 100  Q
    |||||||||||| ||||| ||||||||||||| ||||||||| |||         |  |||| ||| ||||| |||||||| ||  ||||||||| |||     
T  5884967 atagggagtcaaattacttttagattggtcaaatatttaagctatattttt----tttatataatgtttgttagtctatttttccaactttcttttatat 5884872  T
Q  101 tttcttttattccttaatgtgtatgtgg 128  Q
    ||||||||||||||||||||||||||||    
T  5884871 tttcttttattccttaatgtgtatgtgg 5884844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 5884771 - 5884739
Alignment:
Q  211 tcatgaagaagtttatgaaaaatggttgttcat 243  Q
    |||||||||||||||| ||||||||||||||||    
T  5884771 tcatgaagaagtttataaaaaatggttgttcat 5884739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 51167312 - 51167249
Alignment:
Q  59 atatgatggttgtttgtctatttgtcagactttctttcatagtttcttttattccttaatgtgta 123  Q
    |||||||| ||||| ||||||||  | | ||||||||||| ||||||||||||||||||||||||    
T  51167312 atatgatgtttgttagtctattttcccgtctttctttcat-gtttcttttattccttaatgtgta 51167249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University