View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_low_24 (Length: 294)
Name: NF12879_low_24
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_low_24 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 49008455 - 49008738
Alignment:
| Q |
11 |
cacagacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgat |
110 |
Q |
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| T |
49008455 |
cacagacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgat |
49008554 |
T |
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| Q |
111 |
gcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacc |
210 |
Q |
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| T |
49008555 |
gcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcagccatcacgagatcgtcttttaacaattgttctaacc |
49008654 |
T |
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| Q |
211 |
cttctttggaccttaattacccttcttttatttcctttttcaataatgctagcgttaaatcaaaggtgattacacaagaatttc |
294 |
Q |
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| T |
49008655 |
cttctttggaccttaattacccttcttttatttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttc |
49008738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 73 - 254
Target Start/End: Complemental strand, 8945712 - 8945531
Alignment:
| Q |
73 |
atcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgc |
172 |
Q |
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| T |
8945712 |
atcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacaaaaaaacatcac |
8945613 |
T |
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| Q |
173 |
gcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatttcctttttcaat |
254 |
Q |
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| T |
8945612 |
tacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaat |
8945531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 8958330 - 8958527
Alignment:
| Q |
45 |
cctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtg |
144 |
Q |
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| T |
8958330 |
ccttttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatcttctttgtg |
8958429 |
T |
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| Q |
145 |
cattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt |
242 |
Q |
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| T |
8958430 |
cacttagctactcacaaaaaaacatcactgccatcacaagatcttcttcgaatgattgctctgaaccttctttggatcttaactacccttcttttatt |
8958527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 242
Target Start/End: Original strand, 8974752 - 8974937
Alignment:
| Q |
57 |
ggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttca |
156 |
Q |
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| T |
8974752 |
ggagctggtcatatcaaccccaacaaagcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgcactcaacttca |
8974851 |
T |
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| Q |
157 |
ctcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt |
242 |
Q |
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| T |
8974852 |
cacaaaaaaacatcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttatt |
8974937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 8963342 - 8963456
Alignment:
| Q |
43 |
cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg |
142 |
Q |
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| T |
8963342 |
caccttttgcattgggagctggtcatatcaaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttg |
8963441 |
T |
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| Q |
143 |
tgcattaaacttcac |
157 |
Q |
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| T |
8963442 |
tgcacttaacttcac |
8963456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 254
Target Start/End: Complemental strand, 34962525 - 34962314
Alignment:
| Q |
43 |
cacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatg |
142 |
Q |
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| T |
34962525 |
caccttttgcattgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttg |
34962426 |
T |
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| Q |
143 |
tgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt |
242 |
Q |
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| T |
34962425 |
tgcacttaaatactcacaaaaaaacatcactaccatcacaagatcctcttccaatgattgttctaaaccttccttggatcttaactacccttcttttatt |
34962326 |
T |
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| Q |
243 |
tcctttttcaat |
254 |
Q |
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| T |
34962325 |
gcttttttcaat |
34962314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 242
Target Start/End: Complemental strand, 21686934 - 21686706
Alignment:
| Q |
14 |
agacattggtaatggttacagaccagcttcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgca |
113 |
Q |
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| T |
21686934 |
agacattggaaatggtaacagagcagcaactccttttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatc |
21686835 |
T |
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| Q |
114 |
ggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgaccctt |
213 |
Q |
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| T |
21686834 |
ggtgtacaagattatattaatcttctttgtgcacttaacttcacacaaaaaaacatcagtgccattacaagatcttctttcaatgattgctctaaacctt |
21686735 |
T |
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| Q |
214 |
ctttggaccttaattacccttcttttatt |
242 |
Q |
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| T |
21686734 |
ccttagatcttaactacccttcttttatt |
21686706 |
T |
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