View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12879_low_25 (Length: 288)

Name: NF12879_low_25
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12879_low_25
NF12879_low_25
[»] chr4 (11 HSPs)
chr4 (192-263)||(38846976-38847047)
chr4 (167-256)||(12797277-12797366)
chr4 (167-256)||(23292925-23293014)
chr4 (166-256)||(28964186-28964276)
chr4 (207-256)||(16073425-16073474)
chr4 (207-256)||(21945534-21945583)
chr4 (207-256)||(29205475-29205524)
chr4 (207-247)||(4157189-4157229)
chr4 (207-247)||(4157476-4157516)
chr4 (167-239)||(5414100-5414172)
chr4 (168-248)||(34306744-34306824)
[»] chr6 (7 HSPs)
chr6 (203-288)||(4877942-4878027)
chr6 (168-256)||(34595165-34595253)
chr6 (167-256)||(28152129-28152218)
chr6 (207-248)||(32978878-32978919)
chr6 (207-288)||(24645480-24645561)
chr6 (168-256)||(28715326-28715414)
chr6 (208-256)||(32511646-32511694)
[»] chr3 (2 HSPs)
chr3 (168-256)||(20503496-20503584)
chr3 (207-256)||(26492184-26492233)
[»] chr2 (4 HSPs)
chr2 (165-248)||(18840950-18841033)
chr2 (170-256)||(2438661-2438747)
chr2 (168-256)||(15972904-15972992)
chr2 (207-256)||(30404829-30404878)
[»] scaffold0083 (1 HSPs)
scaffold0083 (207-256)||(45509-45558)
[»] chr7 (1 HSPs)
chr7 (207-256)||(21880183-21880232)
[»] scaffold0053 (1 HSPs)
scaffold0053 (207-263)||(8822-8878)
[»] chr5 (4 HSPs)
chr5 (168-256)||(21576685-21576773)
chr5 (170-256)||(30502330-30502416)
chr5 (170-256)||(30542673-30542759)
chr5 (227-263)||(15382503-15382539)
[»] scaffold0652 (1 HSPs)
scaffold0652 (169-256)||(403-490)
[»] chr8 (1 HSPs)
chr8 (207-256)||(3025582-3025631)
[»] chr1 (4 HSPs)
chr1 (207-256)||(1815288-1815337)
chr1 (168-256)||(18337360-18337448)
chr1 (207-251)||(21530725-21530769)
chr1 (207-263)||(46348362-46348418)
[»] scaffold0697 (1 HSPs)
scaffold0697 (207-251)||(1680-1724)


Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 38846976 - 38847047
Alignment:
Q  192 attaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatga 263  Q
    |||| ||||||||  ||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  38846976 attaggtatgttctggtgtcggacacgtgtcgtatccgacactgacacttgtaattacactgaataatatga 38847047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 12797277 - 12797366
Alignment:
Q  167 actatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||| ||||||||||| ||||||| ||||    ||| || ||||||||||||| |||| |||||||| |||||||||||||| |||||||    
T  12797277 actacgaagcacgaacattcctcggattagacttgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaat 12797366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Original strand, 23292925 - 23293014
Alignment:
Q  167 actatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||||||||||| ||  |||||| |||| |  ||| || ||||| |||| ||||||| |||||||| ||||||||||||||||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaat 23293014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 28964186 - 28964276
Alignment:
Q  166 aactatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| | ||  |||||| |||| |  ||| || ||||| || ||||||||| |||||||| |||||||||||||| |||||||    
T  28964186 aactatgaagcatggacactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaat 28964276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 16073474 - 16073425
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| ||||||| |||| |||||||| |||||||||||||| |||||||    
T  16073474 gtgtcggacatgtatcgtgtccgacaccgacacttgtaattacactgaat 16073425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 21945583 - 21945534
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||| | |||||||| |||||||||||||| |||||||    
T  21945583 gtgtcggacatgtgtcatgtccgacaccgacacttgtaattacactgaat 21945534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 29205524 - 29205475
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||||| ||| |||| |||||||||||||| |||||||    
T  29205524 gtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaat 29205475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 4157229 - 4157189
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaatt 247  Q
    ||||| |||||||||||| |||||||| |||||||||||||    
T  4157229 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 4157516 - 4157476
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaatt 247  Q
    ||||| |||||||||||| |||||||| |||||||||||||    
T  4157516 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatt 4157476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 5414100 - 5414172
Alignment:
Q  167 actatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacac 239  Q
    ||||||||||||| ||  |||| | || | || ||| ||||||||||||| ||||||| ||||||||||||||    
T  5414100 actatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacac 5414172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 34306744 - 34306824
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaatta 248  Q
    ||||||||||||||| ||||||  |||| |  |||  | ||||| |||| ||||||| |||||||| ||||||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaatta 34306824  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 288
Target Start/End: Complemental strand, 4878027 - 4877942
Alignment:
Q  203 tcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatgannnnnnncaaattattagctgtgtc 288  Q
    ||||||||| |||||||||||| |||||||| |||||||||||||||||| ||| || |||       ||||||||||||||||||    
T  4878027 tcctgtgtcggacatgtgtcgtgtccgacaccgacacttgtaattatacttaattatgtgacttttttcaaattattagctgtgtc 4877942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 34595253 - 34595165
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  |||||| |||| || ||| || |||||||||| ||||||| |||||||| |||||||||||||| |||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 34595165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 28152218 - 28152129
Alignment:
Q  167 actatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||||||||||||||  |||||| |||| |  ||| || ||||| |||| ||||||| |||||||| |||||||||||||| |||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 28152129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Original strand, 32978878 - 32978919
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaatta 248  Q
    ||||| |||||||||||| |||||||| ||||||||||||||    
T  32978878 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaatta 32978919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 288
Target Start/End: Complemental strand, 24645561 - 24645480
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatgannnnnnncaaattattagctgtgtc 288  Q
    ||||| |||| ||||||| || ||||| ||||||||||| |||||||||| || |||       ||||||||||||||||||    
T  24645561 gtgtcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtgatttttttcaaattattagctgtgtc 24645480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 28715414 - 28715326
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  | ||||||||| |  ||| || |||||  ||| ||||||| |||||||| |||||||||||||| |||||||    
T  28715414 ctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 28715326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 32511646 - 32511694
Alignment:
Q  208 tgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||| |||||||||||||||  |||||| |||||| |||||||    
T  32511646 tgtcagacatatgtcgtatccgacaccaacacttataattacactgaat 32511694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 20503584 - 20503496
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  |||||| |||| |  ||| || |||||||||||||||||| ||| |||| |||||||||||||| |||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaat 20503496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 26492184 - 26492233
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||||||||| |||||||| || ||||||||||| |||||||    
T  26492184 gtgtcagacatgtgtcgtgtccgacaccgatacttgtaattacactgaat 26492233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 18840950 - 18841033
Alignment:
Q  165 caactatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaatta 248  Q
    ||||||||||||||| ||  |||||| |||| || ||| || ||||| |||||||||||| || ||||| ||||||||||||||    
T  18840950 caactatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaatta 18841033  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 2438661 - 2438747
Alignment:
Q  170 atgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||| ||  |||||| |||| |  ||| || ||||| |||||||||||| |||||||| |||||||||||||| |||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaat 2438747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 15972992 - 15972904
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| || ||| ||| |||| || ||| || | ||| |||| ||||||| |||||||| |||||||||||||| |||||||    
T  15972992 ctatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 15972904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 30404829 - 30404878
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||||| |||||| | |||||||||||||| |||||||    
T  30404829 gtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaat 30404878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 45509 - 45558
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||| ||||||| |||||||| |||||||||||||| |||||||    
T  45509 gtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaat 45558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 21880232 - 21880183
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||||| |||||||| |||||||||||||| |||||||    
T  21880232 gtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaat 21880183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 8878 - 8822
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatga 263  Q
    ||||| |||| ||||||| |||||||| |||||||||||||| ||| ||||||||||    
T  8878 gtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaataatatga 8822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 21576685 - 21576773
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  |||||| |||| |  ||| || |||||||||| ||||||| |||||||  |||||||||||||| |||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaat 21576773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 30502330 - 30502416
Alignment:
Q  170 atgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||||  |||| | |||| | |||| || ||||| |||||||||||| |||||||| ||||| | |||||| |||||||    
T  30502330 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaat 30502416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 256
Target Start/End: Original strand, 30542673 - 30542759
Alignment:
Q  170 atgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||||  |||| | |||| | |||| || ||||| |||||||||||| |||||||| ||||| | |||||| |||||||    
T  30542673 atgaagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaat 30542759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 15382539 - 15382503
Alignment:
Q  227 ccgacactgacacttgtaattatactgaataatatga 263  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  15382539 ccgacaccgacacttgtaattatactgaattatatga 15382503  T

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Target: scaffold0652 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 403 - 490
Alignment:
Q  169 tatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||||||||| ||  |||||| |||| || ||| || ||||| |||| | ||||| |||||||| |||||||||||||| |||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaat 490  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 3025631 - 3025582
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||| ||||||| |||||||||||||| | |||||| |||||||    
T  3025631 gtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaat 3025582  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 1815337 - 1815288
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    ||||| |||||||||||| || ||||| |||||||||||||| |||||||    
T  1815337 gtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaat 1815288  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 18337448 - 18337360
Alignment:
Q  168 ctatgaagcacgaacgttcctcgaattaagtatgttcctgtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaat 256  Q
    |||||||||||| ||  |||||| || | | |||| || ||||| |||| |||| || |||||||| |||||||||||||| |||||||    
T  18337448 ctatgaagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaat 18337360  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 21530769 - 21530725
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatac 251  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||    
T  21530769 gtgtcggacatgtgtcgtgtccgacaccgacacttataattatac 21530725  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 46348362 - 46348418
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatactgaataatatga 263  Q
    ||||| |||| ||||||| |||||||| |||||||||||||| ||| ||| ||||||    
T  46348362 gtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatatga 46348418  T

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Target: scaffold0697 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 1724 - 1680
Alignment:
Q  207 gtgtcagacatgtgtcgtatccgacactgacacttgtaattatac 251  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||    
T  1724 gtgtcggacatgtgtcgtgtccgacaccgacacttataattatac 1680  T

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